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Journal Abstract Search

1050 related items for PubMed ID: 16400647

  • 21. Sampling of states for estimating the folding funnel entropy and energy landscape of a model alpha-helical hairpin peptide.
    Chapagain PP, Parra JL, Gerstman BS, Liu Y.
    J Chem Phys; 2007 Aug 21; 127(7):075103. PubMed ID: 17718634
    [Abstract] [Full Text] [Related]

  • 22. A statistical model for predicting protein folding rates from amino acid sequence with structural class information.
    Gromiha MM.
    J Chem Inf Model; 2005 Aug 21; 45(2):494-501. PubMed ID: 15807515
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  • 23. Estimation of changes in side chain configurational entropy in binding and folding: general methods and application to helix formation.
    Lee KH, Xie D, Freire E, Amzel LM.
    Proteins; 1994 Sep 21; 20(1):68-84. PubMed ID: 7824524
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  • 24. Uncover the conserved property underlying sequence-distant and structure-similar proteins.
    Gao J, Li Z.
    Biopolymers; 2010 Apr 21; 93(4):340-7. PubMed ID: 19890963
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  • 25. New method for protein secondary structure assignment based on a simple topological descriptor.
    Taylor T, Rivera M, Wilson G, Vaisman II.
    Proteins; 2005 Aug 15; 60(3):513-24. PubMed ID: 15887224
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  • 26. Class-specific correlations between protein folding rate, structure-derived, and sequence-derived descriptors.
    Kuznetsov IB, Rackovsky S.
    Proteins; 2004 Feb 01; 54(2):333-41. PubMed ID: 14696195
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  • 27. Comparison between long-range interactions and contact order in determining the folding rate of two-state proteins: application of long-range order to folding rate prediction.
    Gromiha MM, Selvaraj S.
    J Mol Biol; 2001 Jun 29; 310(1):27-32. PubMed ID: 11419934
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  • 28. Conformational subspace in simulation of early-stage protein folding.
    Jurkowski W, Brylinski M, Konieczny L, Wiíniowski Z, Roterman I.
    Proteins; 2004 Apr 01; 55(1):115-27. PubMed ID: 14997546
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  • 29. Rotamer strain energy in protein helices - quantification of a major force opposing protein folding.
    Penel S, Doig AJ.
    J Mol Biol; 2001 Jan 26; 305(4):961-8. PubMed ID: 11162106
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  • 30. Benchmarking of TASSER in the ab initio limit.
    Borreguero JM, Skolnick J.
    Proteins; 2007 Jul 01; 68(1):48-56. PubMed ID: 17444524
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  • 31. Refinement of the long-range order parameter in predicting folding rates of two-state proteins.
    Harihar B, Selvaraj S.
    Biopolymers; 2009 Nov 01; 91(11):928-35. PubMed ID: 19603493
    [Abstract] [Full Text] [Related]

  • 32. The ConSurf-HSSP database: the mapping of evolutionary conservation among homologs onto PDB structures.
    Glaser F, Rosenberg Y, Kessel A, Pupko T, Ben-Tal N.
    Proteins; 2005 Feb 15; 58(3):610-7. PubMed ID: 15614759
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  • 33. Inter-residue interactions in protein folding and stability.
    Gromiha MM, Selvaraj S.
    Prog Biophys Mol Biol; 2004 Oct 15; 86(2):235-77. PubMed ID: 15288760
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  • 34. Navigation and analysis of the energy landscape of small proteins using the activation-relaxation technique.
    Mousseau N, Derreumaux P, Gilbert G.
    Phys Biol; 2005 Nov 09; 2(4):S101-7. PubMed ID: 16280615
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  • 35. Local-structural diversity and protein folding: application to all-beta off-lattice protein models.
    Pan PW, Gordon HL, Rothstein SM.
    J Chem Phys; 2006 Jan 14; 124(2):024905. PubMed ID: 16422646
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  • 36. Flexibility of "polyunsaturated fatty acid chains" and peptide backbones: A comparative ab initio study.
    Law JM, Setiadi DH, Chass GA, Csizmadia IG, Viskolcz B.
    J Phys Chem A; 2005 Jan 27; 109(3):520-33. PubMed ID: 16833374
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  • 37. Multiple contact network is a key determinant to protein folding rates.
    Gromiha MM.
    J Chem Inf Model; 2009 Apr 27; 49(4):1130-5. PubMed ID: 19338373
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  • 38. raf RBD and ubiquitin proteins share similar folds, folding rates and mechanisms despite having unrelated amino acid sequences.
    Vallée-Bélisle A, Turcotte JF, Michnick SW.
    Biochemistry; 2004 Jul 06; 43(26):8447-58. PubMed ID: 15222756
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  • 39. Ab initio prediction of the three-dimensional structure of a de novo designed protein: a double-blind case study.
    Klepeis JL, Wei Y, Hecht MH, Floudas CA.
    Proteins; 2005 Feb 15; 58(3):560-70. PubMed ID: 15609306
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  • 40. How well can we predict native contacts in proteins based on decoy structures and their energies?
    Zhu J, Zhu Q, Shi Y, Liu H.
    Proteins; 2003 Sep 01; 52(4):598-608. PubMed ID: 12910459
    [Abstract] [Full Text] [Related]

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