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Journal Abstract Search

369 related items for PubMed ID: 16419070

  • 1. Prediction of buried helices in multispan alpha helical membrane proteins.
    Adamian L, Liang J.
    Proteins; 2006 Apr 01; 63(1):1-5. PubMed ID: 16419070
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  • 2. How strongly do sequence conservation patterns and empirical scales correlate with exposure patterns of transmembrane helices of membrane proteins?
    Park Y, Helms V.
    Biopolymers; 2006 Nov 01; 83(4):389-99. PubMed ID: 16838301
    [Abstract] [Full Text] [Related]

  • 3. A knowledge-based scale for the analysis and prediction of buried and exposed faces of transmembrane domain proteins.
    Beuming T, Weinstein H.
    Bioinformatics; 2004 Aug 12; 20(12):1822-35. PubMed ID: 14988128
    [Abstract] [Full Text] [Related]

  • 4. Prediction of distant residue contacts with the use of evolutionary information.
    Vicatos S, Reddy BV, Kaznessis Y.
    Proteins; 2005 Mar 01; 58(4):935-49. PubMed ID: 15645442
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  • 6. NdPASA: a novel pairwise protein sequence alignment algorithm that incorporates neighbor-dependent amino acid propensities.
    Wang J, Feng JA.
    Proteins; 2005 Feb 15; 58(3):628-37. PubMed ID: 15616964
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  • 7. DPROT: prediction of disordered proteins using evolutionary information.
    Sethi D, Garg A, Raghava GP.
    Amino Acids; 2008 Oct 15; 35(3):599-605. PubMed ID: 18425404
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  • 8. Entropy capacity determines protein folding.
    Galzitskaya OV, Garbuzynskiy SO.
    Proteins; 2006 Apr 01; 63(1):144-54. PubMed ID: 16400647
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  • 9. Discrimination of outer membrane proteins using support vector machines.
    Park KJ, Gromiha MM, Horton P, Suwa M.
    Bioinformatics; 2005 Dec 01; 21(23):4223-9. PubMed ID: 16204348
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  • 10. Statistical and molecular dynamics studies of buried waters in globular proteins.
    Park S, Saven JG.
    Proteins; 2005 Aug 15; 60(3):450-63. PubMed ID: 15937899
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  • 13. Prediction of transmembrane regions of beta-barrel proteins using ANN- and SVM-based methods.
    Natt NK, Kaur H, Raghava GP.
    Proteins; 2004 Jul 01; 56(1):11-8. PubMed ID: 15162482
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  • 14. Benchmarking of TASSER in the ab initio limit.
    Borreguero JM, Skolnick J.
    Proteins; 2007 Jul 01; 68(1):48-56. PubMed ID: 17444524
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  • 17. SPEM: improving multiple sequence alignment with sequence profiles and predicted secondary structures.
    Zhou H, Zhou Y.
    Bioinformatics; 2005 Sep 15; 21(18):3615-21. PubMed ID: 16020471
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  • 18. waveTM: wavelet-based transmembrane segment prediction.
    Pashou EE, Litou ZI, Liakopoulos TD, Hamodrakas SJ.
    In Silico Biol; 2004 Sep 15; 4(2):127-31. PubMed ID: 15107018
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  • 19. kPROT: a knowledge-based scale for the propensity of residue orientation in transmembrane segments. Application to membrane protein structure prediction.
    Pilpel Y, Ben-Tal N, Lancet D.
    J Mol Biol; 1999 Dec 10; 294(4):921-35. PubMed ID: 10588897
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  • 20. Native and modeled disulfide bonds in proteins: knowledge-based approaches toward structure prediction of disulfide-rich polypeptides.
    Thangudu RR, Vinayagam A, Pugalenthi G, Manonmani A, Offmann B, Sowdhamini R.
    Proteins; 2005 Mar 01; 58(4):866-79. PubMed ID: 15645448
    [Abstract] [Full Text] [Related]

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