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Journal Abstract Search

266 related items for PubMed ID: 16426058

  • 1. VISCANA: visualized cluster analysis of protein-ligand interaction based on the ab initio fragment molecular orbital method for virtual ligand screening.
    Amari S, Aizawa M, Zhang J, Fukuzawa K, Mochizuki Y, Iwasawa Y, Nakata K, Chuman H, Nakano T.
    J Chem Inf Model; 2006; 46(1):221-30. PubMed ID: 16426058
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  • 6. ProPose: steered virtual screening by simultaneous protein-ligand docking and ligand-ligand alignment.
    Seifert MH.
    J Chem Inf Model; 2005; 45(2):449-60. PubMed ID: 15807511
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  • 7. Molecular interactions between estrogen receptor and its ligand studied by the ab initio fragment molecular orbital method.
    Fukuzawa K, Mochizuki Y, Tanaka S, Kitaura K, Nakano T.
    J Phys Chem B; 2006 Aug 17; 110(32):16102-10. PubMed ID: 16898767
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  • 10. Molecular recognition mechanism of FK506 binding protein: an all-electron fragment molecular orbital study.
    Nakanishi I, Fedorov DG, Kitaura K.
    Proteins; 2007 Jul 01; 68(1):145-58. PubMed ID: 17387719
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  • 11. Rational automatic search method for stable docking models of protein and ligand.
    Mizutani MY, Tomioka N, Itai A.
    J Mol Biol; 1994 Oct 21; 243(2):310-26. PubMed ID: 7932757
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  • 12. Analysis and optimization of structure-based virtual screening protocols (1): exploration of ligand conformational sampling techniques.
    Good AC, Cheney DL.
    J Mol Graph Model; 2003 Sep 21; 22(1):23-30. PubMed ID: 12798388
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  • 13. Automatic clustering of docking poses in virtual screening process using self-organizing map.
    Bouvier G, Evrard-Todeschi N, Girault JP, Bertho G.
    Bioinformatics; 2010 Jan 01; 26(1):53-60. PubMed ID: 19910307
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  • 16. Rapid protein-ligand docking using soft modes from molecular dynamics simulations to account for protein deformability: binding of FK506 to FKBP.
    Zacharias M.
    Proteins; 2004 Mar 01; 54(4):759-67. PubMed ID: 14997571
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  • 20. Exploring the binding site structure of the PPAR gamma ligand-binding domain by computational solvent mapping.
    Sheu SH, Kaya T, Waxman DJ, Vajda S.
    Biochemistry; 2005 Feb 01; 44(4):1193-209. PubMed ID: 15667213
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