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269 related items for PubMed ID: 16448122

  • 21. Structure and dynamics of an RNA tetraloop: a joint molecular dynamics and NMR study.
    Koplin J, Mu Y, Richter C, Schwalbe H, Stock G.
    Structure; 2005 Sep; 13(9):1255-67. PubMed ID: 16154083
    [Abstract] [Full Text] [Related]

  • 22. Loop and stem dynamics during RNA hairpin folding and unfolding.
    Sarkar K, Nguyen DA, Gruebele M.
    RNA; 2010 Dec; 16(12):2427-34. PubMed ID: 20962040
    [Abstract] [Full Text] [Related]

  • 23. Structure and dynamics in DNA looped domains: CAG triplet repeat sequence dynamics probed by 2-aminopurine fluorescence.
    Lee BJ, Barch M, Castner EW, Völker J, Breslauer KJ.
    Biochemistry; 2007 Sep 25; 46(38):10756-66. PubMed ID: 17718541
    [Abstract] [Full Text] [Related]

  • 24. Deprotonation stimulates productive folding in allosteric TRAP hammerhead ribozymes.
    Saksmerprome V, Burke DH.
    J Mol Biol; 2004 Aug 13; 341(3):685-94. PubMed ID: 15288779
    [Abstract] [Full Text] [Related]

  • 25. Folding of human telomerase RNA pseudoknot using ion-jump and temperature-quench simulations.
    Biyun S, Cho SS, Thirumalai D.
    J Am Chem Soc; 2011 Dec 21; 133(50):20634-43. PubMed ID: 22082261
    [Abstract] [Full Text] [Related]

  • 26. Accurate curve fitting procedure for UV melting analysis of highly thermostable RNA hairpins.
    Kawakami J, Tanaka Y, Kishimoto K.
    Nucleic Acids Symp Ser (Oxf); 2009 Dec 21; (53):227-8. PubMed ID: 19749343
    [Abstract] [Full Text] [Related]

  • 27. Exploring the complex folding kinetics of RNA hairpins: II. Effect of sequence, length, and misfolded states.
    Zhang W, Chen SJ.
    Biophys J; 2006 Feb 01; 90(3):778-87. PubMed ID: 16272439
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  • 28. The transition state transit time of WW domain folding is controlled by energy landscape roughness.
    Liu F, Nakaema M, Gruebele M.
    J Chem Phys; 2009 Nov 21; 131(19):195101. PubMed ID: 19929078
    [Abstract] [Full Text] [Related]

  • 29. Exploring the complex folding kinetics of RNA hairpins: I. General folding kinetics analysis.
    Zhang W, Chen SJ.
    Biophys J; 2006 Feb 01; 90(3):765-77. PubMed ID: 16272440
    [Abstract] [Full Text] [Related]

  • 30. Thermal stability, structural features, and B-to-Z transition in DNA tetraloop hairpins as determined by optical spectroscopy in d(CG)(3)T(4)(CG)(3) and d(CG)(3)A(4)(CG)(3) oligodeoxynucleotides.
    Hernández B, Baumruk V, Gouyette C, Ghomi M.
    Biopolymers; 2005 May 01; 78(1):21-34. PubMed ID: 15690428
    [Abstract] [Full Text] [Related]

  • 31. Remarkable morphological variability of a common RNA folding motif: the GNRA tetraloop-receptor interaction.
    Abramovitz DL, Pyle AM.
    J Mol Biol; 1997 Feb 28; 266(3):493-506. PubMed ID: 9067606
    [Abstract] [Full Text] [Related]

  • 32. Folding kinetics of proteins and cold denaturation.
    Collet O.
    J Chem Phys; 2008 Oct 21; 129(15):155101. PubMed ID: 19045231
    [Abstract] [Full Text] [Related]

  • 33. Structure and folding dynamics of a DNA hairpin with a stabilising d(GNA) trinucleotide loop: influence of base pair mis-matches and point mutations on conformational equilibria.
    Balkwill GD, Williams HE, Searle MS.
    Org Biomol Chem; 2007 Mar 07; 5(5):832-9. PubMed ID: 17315071
    [Abstract] [Full Text] [Related]

  • 34. Folding of single-stranded DNA quadruplexes containing an autonomously stable mini-hairpin loop.
    Balkwill GD, Garner TP, Searle MS.
    Mol Biosyst; 2009 May 07; 5(5):542-7. PubMed ID: 19381368
    [Abstract] [Full Text] [Related]

  • 35. Folding of the 25 residue Abeta(12-36) peptide in TFE/water: temperature-dependent transition from a funneled free-energy landscape to a rugged one.
    Kamiya N, Mitomo D, Shea JE, Higo J.
    J Phys Chem B; 2007 May 17; 111(19):5351-6. PubMed ID: 17439167
    [Abstract] [Full Text] [Related]

  • 36. Experimental and theoretical studies of the effects of deoxyribose substitutions on the stability of the UUCG tetraloop.
    Williams DJ, Hall KB.
    J Mol Biol; 2000 Mar 17; 297(1):251-65. PubMed ID: 10704320
    [Abstract] [Full Text] [Related]

  • 37. Kinetics and thermodynamics make different contributions to RNA folding in vitro and in yeast.
    Mahen EM, Harger JW, Calderon EM, Fedor MJ.
    Mol Cell; 2005 Jul 01; 19(1):27-37. PubMed ID: 15989962
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  • 38. Perturbation of the hierarchical folding of a large RNA by the destabilization of its Scaffold's tertiary structure.
    Shcherbakova I, Brenowitz M.
    J Mol Biol; 2005 Nov 25; 354(2):483-96. PubMed ID: 16242711
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  • 39. Nanosecond folding dynamics of a three-stranded beta-sheet.
    Xu Y, Purkayastha P, Gai F.
    J Am Chem Soc; 2006 Dec 13; 128(49):15836-42. PubMed ID: 17147395
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  • 40. Loop propensity of the sequence YKGQP from staphylococcal nuclease: implications for the folding of nuclease.
    Patel S, Sasidhar YU.
    J Pept Sci; 2007 Oct 13; 13(10):679-92. PubMed ID: 17787022
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