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321 related items for PubMed ID: 16471699

  • 1. Solvation model based on order parameters and a fast sampling method for the calculation of the solvation free energies of peptides.
    Gu C, Lustig S, Trout BL.
    J Phys Chem B; 2006 Jan 26; 110(3):1476-84. PubMed ID: 16471699
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  • 4. A solvent model for simulations of peptides in bilayers. I. Membrane-promoting alpha-helix formation.
    Efremov RG, Nolde DE, Vergoten G, Arseniev AS.
    Biophys J; 1999 May 26; 76(5):2448-59. PubMed ID: 10233062
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  • 5. Accurate and efficient generalized born model based on solvent accessibility: derivation and application for LogP octanol/water prediction and flexible peptide docking.
    Totrov M.
    J Comput Chem; 2004 Mar 26; 25(4):609-19. PubMed ID: 14735578
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  • 6. Application of the frozen atom approximation to the GB/SA continuum model for solvation free energy.
    Guvench O, Weiser J, Shenkin P, Kolossváry I, Still WC.
    J Comput Chem; 2002 Jan 30; 23(2):214-21. PubMed ID: 11924735
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  • 7. Universal solvation model based on solute electron density and on a continuum model of the solvent defined by the bulk dielectric constant and atomic surface tensions.
    Marenich AV, Cramer CJ, Truhlar DG.
    J Phys Chem B; 2009 May 07; 113(18):6378-96. PubMed ID: 19366259
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  • 8. Solvation free energies of amino acid side chain analogs for common molecular mechanics water models.
    Shirts MR, Pande VS.
    J Chem Phys; 2005 Apr 01; 122(13):134508. PubMed ID: 15847482
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  • 9. FACTS: Fast analytical continuum treatment of solvation.
    Haberthür U, Caflisch A.
    J Comput Chem; 2008 Apr 15; 29(5):701-15. PubMed ID: 17918282
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  • 13. Implicit nonpolar solvent models.
    Tan C, Tan YH, Luo R.
    J Phys Chem B; 2007 Oct 25; 111(42):12263-74. PubMed ID: 17918880
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  • 14. Polyproline II helix is the preferred conformation for unfolded polyalanine in water.
    Mezei M, Fleming PJ, Srinivasan R, Rose GD.
    Proteins; 2004 May 15; 55(3):502-7. PubMed ID: 15103614
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