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263 related items for PubMed ID: 16477601
21. Helix, sheet, and polyproline II frequencies and strong nearest neighbor effects in a restricted coil library. Jha AK, Colubri A, Zaman MH, Koide S, Sosnick TR, Freed KF. Biochemistry; 2005 Jul 19; 44(28):9691-702. PubMed ID: 16008354 [Abstract] [Full Text] [Related]
22. Molecular dynamics study of the solvation of an alpha-helical transmembrane peptide by DMSO. Duarte AM, van Mierlo CP, Hemminga MA. J Phys Chem B; 2008 Jul 24; 112(29):8664-71. PubMed ID: 18582096 [Abstract] [Full Text] [Related]
23. Amino acid pairing preferences in parallel beta-sheets in proteins. Fooks HM, Martin AC, Woolfson DN, Sessions RB, Hutchinson EG. J Mol Biol; 2006 Feb 10; 356(1):32-44. PubMed ID: 16337654 [Abstract] [Full Text] [Related]
24. Patterns in ionizable side chain interactions in protein structures. Gandini D, Gogioso L, Bolognesi M, Bordo D. Proteins; 1996 Apr 10; 24(4):439-49. PubMed ID: 9162945 [Abstract] [Full Text] [Related]
25. Quantitative analysis of the structure-hydrophobicity relationship for di- and tripeptides based on voltammetric measurements with an oil/water interface. Osakai T, Hirai T, Wakamiya T, Sawada S. Phys Chem Chem Phys; 2006 Feb 28; 8(8):985-93. PubMed ID: 16482341 [Abstract] [Full Text] [Related]
26. A 3(10)-helical pentapeptide in water: interplay of alpha,alpha-disubstituted amino acids and the central residue on structure formation. Wang J, McElheny D, Fu Y, Li G, Kim J, Zhou Z, Wu L, Keiderling TA, Hammer RP. Biopolymers; 2009 Feb 28; 92(5):452-64. PubMed ID: 19489061 [Abstract] [Full Text] [Related]
27. Minimalist representations and the importance of nearest neighbor effects in protein folding simulations. Colubri A, Jha AK, Shen MY, Sali A, Berry RS, Sosnick TR, Freed KF. J Mol Biol; 2006 Nov 03; 363(4):835-57. PubMed ID: 16982067 [Abstract] [Full Text] [Related]
28. Infrared absorbances of protein side chains. Rahmelow K, Hübner W, Ackermann T. Anal Biochem; 1998 Mar 01; 257(1):1-11. PubMed ID: 9512765 [Abstract] [Full Text] [Related]
29. Vibrational analysis of amino acids and short peptides in hydrated media. II. Role of KLLL repeats to induce helical conformations in minimalist LK-peptides. Guiffo-Soh G, Hernandez B, Coïc YM, Boukhalfa-Heniche FZ, Ghomi M. J Phys Chem B; 2007 Nov 01; 111(43):12563-72. PubMed ID: 17918991 [Abstract] [Full Text] [Related]
30. [Analysis of interactions of buried polar side chains in beta-proteins]. Brazhnikov EV, Efimov AV. Mol Biol (Mosk); 2005 Nov 01; 39(5):878-86. PubMed ID: 16240721 [Abstract] [Full Text] [Related]
31. Revisiting "reverse hydrophobic effect": applicable only to coil mutations at the surface. Gromiha MM. Biopolymers; 2009 Jul 01; 91(7):591-9. PubMed ID: 19283830 [Abstract] [Full Text] [Related]
32. Amino acid pairing at the N- and C-termini of helical segments in proteins. Fonseca NA, Camacho R, Magalhães AL. Proteins; 2008 Jan 01; 70(1):188-96. PubMed ID: 17654550 [Abstract] [Full Text] [Related]
33. Probing the competition between secondary structures and local preferences in gas phase isolated peptide backbones. Chin W, Piuzzi F, Dimicoli I, Mons M. Phys Chem Chem Phys; 2006 Mar 07; 8(9):1033-48. PubMed ID: 16633584 [Abstract] [Full Text] [Related]
34. Conformational fluctuations versus constraints in amino acid side chains: the evolution of information content from free amino acids to proteins. Bojarski AJ, Nowak M, Testa B. Chem Biodivers; 2006 Mar 07; 3(3):245-73. PubMed ID: 17193263 [Abstract] [Full Text] [Related]
35. Neighbor effect and local conformation in protein structures. Ghadimi M, Khalifeh K, Heshmati E. Amino Acids; 2017 Sep 07; 49(9):1641-1646. PubMed ID: 28702701 [Abstract] [Full Text] [Related]
36. Quantitative expression of protein heterogeneity: Response of amino acid side chains to their local environment. Bandyopadhyay D, Mehler EL. Proteins; 2008 Aug 07; 72(2):646-59. PubMed ID: 18247345 [Abstract] [Full Text] [Related]
37. Conformational analysis of XA and AX dipeptides in water by electronic circular dichroism and 1H NMR spectroscopy. Hagarman A, Measey T, Doddasomayajula RS, Dragomir I, Eker F, Griebenow K, Schweitzer-Stenner R. J Phys Chem B; 2006 Apr 06; 110(13):6979-86. PubMed ID: 16571011 [Abstract] [Full Text] [Related]
38. Strain in protein structures as viewed through nonrotameric side chains: I. their position and interaction. Heringa J, Argos P. Proteins; 1999 Oct 01; 37(1):30-43. PubMed ID: 10451548 [Abstract] [Full Text] [Related]
39. Geometry of nonbonded interactions involving planar groups in proteins. Chakrabarti P, Bhattacharyya R. Prog Biophys Mol Biol; 2007 Oct 01; 95(1-3):83-137. PubMed ID: 17629549 [Abstract] [Full Text] [Related]
40. Understanding the role of the topology in protein folding by computational inverse folding experiments. Mucherino A, Costantini S, di Serafino D, D'Apuzzo M, Facchiano A, Colonna G. Comput Biol Chem; 2008 Aug 01; 32(4):233-9. PubMed ID: 18479970 [Abstract] [Full Text] [Related] Page: [Previous] [Next] [New Search]