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Journal Abstract Search

211 related items for PubMed ID: 16488429

  • 1. Multiple solvent crystal structures: probing binding sites, plasticity and hydration.
    Mattos C, Bellamacina CR, Peisach E, Pereira A, Vitkup D, Petsko GA, Ringe D.
    J Mol Biol; 2006 Apr 14; 357(5):1471-82. PubMed ID: 16488429
    [Abstract] [Full Text] [Related]

  • 2. Multiple solvent crystal structures of ribonuclease A: an assessment of the method.
    Dechene M, Wink G, Smith M, Swartz P, Mattos C.
    Proteins; 2009 Sep 14; 76(4):861-81. PubMed ID: 19291738
    [Abstract] [Full Text] [Related]

  • 3. Locating and characterizing binding sites on proteins.
    Mattos C, Ringe D.
    Nat Biotechnol; 1996 May 14; 14(5):595-9. PubMed ID: 9630949
    [Abstract] [Full Text] [Related]

  • 4. Locating interaction sites on proteins: the crystal structure of thermolysin soaked in 2% to 100% isopropanol.
    English AC, Done SH, Caves LS, Groom CR, Hubbard RE.
    Proteins; 1999 Dec 01; 37(4):628-40. PubMed ID: 10651278
    [Abstract] [Full Text] [Related]

  • 5. Organic solvent binding to crystalline subtilisin1 in mostly aqueous media and in the neat solvents.
    Schmitke JL, Stern LJ, Klibanov AM.
    Biochem Biophys Res Commun; 1998 Jul 20; 248(2):273-7. PubMed ID: 9675126
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  • 6. Computational sampling of a cryptic drug binding site in a protein receptor: explicit solvent molecular dynamics and inhibitor docking to p38 MAP kinase.
    Frembgen-Kesner T, Elcock AH.
    J Mol Biol; 2006 May 26; 359(1):202-14. PubMed ID: 16616932
    [Abstract] [Full Text] [Related]

  • 7. Analysis of solvent structure in proteins using neutron D2O-H2O solvent maps: pattern of primary and secondary hydration of trypsin.
    Kossiakoff AA, Sintchak MD, Shpungin J, Presta LG.
    Proteins; 1992 Mar 26; 12(3):223-36. PubMed ID: 1557350
    [Abstract] [Full Text] [Related]

  • 8. Exploring the binding site structure of the PPAR gamma ligand-binding domain by computational solvent mapping.
    Sheu SH, Kaya T, Waxman DJ, Vajda S.
    Biochemistry; 2005 Feb 01; 44(4):1193-209. PubMed ID: 15667213
    [Abstract] [Full Text] [Related]

  • 9. A connected-cluster of hydration around myoglobin: correlation between molecular dynamics simulations and experiment.
    Lounnas V, Pettitt BM.
    Proteins; 1994 Feb 01; 18(2):133-47. PubMed ID: 8159663
    [Abstract] [Full Text] [Related]

  • 10. Large-scale networks of hydration water molecules around bovine beta-trypsin revealed by cryogenic X-ray crystal structure analysis.
    Nakasako M.
    J Mol Biol; 1999 Jun 11; 289(3):547-64. PubMed ID: 10356328
    [Abstract] [Full Text] [Related]

  • 11. Structure of porcine pancreatic elastase complexed with FR901277, a novel macrocyclic inhibitor of elastases, at 1.6 A resolution.
    Nakanishi I, Kinoshita T, Sato A, Tada T.
    Biopolymers; 2000 Apr 15; 53(5):434-45. PubMed ID: 10738204
    [Abstract] [Full Text] [Related]

  • 12. Direct structural observation of an acyl-enzyme intermediate in the hydrolysis of an ester substrate by elastase.
    Ding X, Rasmussen BF, Petsko GA, Ringe D.
    Biochemistry; 1994 Aug 09; 33(31):9285-93. PubMed ID: 8049229
    [Abstract] [Full Text] [Related]

  • 13. Role of protein-solvent interactions in refolding: effects of cosolvent additives on the renaturation of porcine pancreatic elastase at various pHs.
    Jaspard E.
    Arch Biochem Biophys; 2000 Mar 15; 375(2):220-8. PubMed ID: 10700378
    [Abstract] [Full Text] [Related]

  • 14. Static and dynamic water molecules in Cu,Zn superoxide dismutase.
    Falconi M, Brunelli M, Pesce A, Ferrario M, Bolognesi M, Desideri A.
    Proteins; 2003 Jun 01; 51(4):607-15. PubMed ID: 12784219
    [Abstract] [Full Text] [Related]

  • 15. Analysis of ligand-bound water molecules in high-resolution crystal structures of protein-ligand complexes.
    Lu Y, Wang R, Yang CY, Wang S.
    J Chem Inf Model; 2007 Jun 01; 47(2):668-75. PubMed ID: 17266298
    [Abstract] [Full Text] [Related]

  • 16. Computational solvent mapping reveals the importance of local conformational changes for broad substrate specificity in mammalian cytochromes P450.
    Clodfelter KH, Waxman DJ, Vajda S.
    Biochemistry; 2006 Aug 08; 45(31):9393-407. PubMed ID: 16878974
    [Abstract] [Full Text] [Related]

  • 17. DRoP: Automated detection of conserved solvent-binding sites on proteins.
    Kearney BM, Schwabe M, Marcus KC, Roberts DM, Dechene M, Swartz P, Mattos C.
    Proteins; 2020 Jan 08; 88(1):152-165. PubMed ID: 31294888
    [Abstract] [Full Text] [Related]

  • 18. Volatile anesthetic binding to proteins is influenced by solvent and aliphatic residues.
    Streiff JH, Jones KA.
    J Chem Inf Model; 2008 Oct 08; 48(10):2066-73. PubMed ID: 18808106
    [Abstract] [Full Text] [Related]

  • 19. Carbohydrate-binding proteins: Dissecting ligand structures through solvent environment occupancy.
    Gauto DF, Di Lella S, Guardia CM, Estrin DA, Martí MA.
    J Phys Chem B; 2009 Jun 25; 113(25):8717-24. PubMed ID: 19485380
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  • 20. Dynamic properties of the first enzymatic reaction steps of porcine pancreatic elastase. How rigid is the active site of the native enzyme? Molecular dynamics simulation.
    Geller M, Carlson-Golab G, Lesyng B, Swanson SM, Meyer EF.
    Biopolymers; 1990 Jun 25; 30(7-8):781-96. PubMed ID: 2275978
    [Abstract] [Full Text] [Related]

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