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207 related items for PubMed ID: 16494434

  • 1. Ultrafast folding of a computationally designed Trp-cage mutant: Trp2-cage.
    Bunagan MR, Yang X, Saven JG, Gai F.
    J Phys Chem B; 2006 Mar 02; 110(8):3759-63. PubMed ID: 16494434
    [Abstract] [Full Text] [Related]

  • 2. The equilibrium properties and folding kinetics of an all-atom Go model of the Trp-cage.
    Linhananta A, Boer J, MacKay I.
    J Chem Phys; 2005 Mar 15; 122(11):114901. PubMed ID: 15836251
    [Abstract] [Full Text] [Related]

  • 3. Folding dynamics of the Trp-cage miniprotein: evidence for a native-like intermediate from combined time-resolved vibrational spectroscopy and molecular dynamics simulations.
    Meuzelaar H, Marino KA, Huerta-Viga A, Panman MR, Smeenk LE, Kettelarij AJ, van Maarseveen JH, Timmerman P, Bolhuis PG, Woutersen S.
    J Phys Chem B; 2013 Oct 03; 117(39):11490-501. PubMed ID: 24050152
    [Abstract] [Full Text] [Related]

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  • 5. Replica exchange simulation of reversible folding/unfolding of the Trp-cage miniprotein in explicit solvent: on the structure and possible role of internal water.
    Paschek D, Nymeyer H, García AE.
    J Struct Biol; 2007 Mar 03; 157(3):524-33. PubMed ID: 17293125
    [Abstract] [Full Text] [Related]

  • 6. High-temperature unfolding of a trp-cage mini-protein: a molecular dynamics simulation study.
    Seshasayee AS.
    Theor Biol Med Model; 2005 Mar 11; 2():7. PubMed ID: 15760474
    [Abstract] [Full Text] [Related]

  • 7. Dynamics and cooperativity of Trp-cage folding.
    Hu Z, Tang Y, Wang H, Zhang X, Lei M.
    Arch Biochem Biophys; 2008 Jul 15; 475(2):140-7. PubMed ID: 18474213
    [Abstract] [Full Text] [Related]

  • 8. Unfolding thermodynamics of Trp-cage, a 20 residue miniprotein, studied by differential scanning calorimetry and circular dichroism spectroscopy.
    Streicher WW, Makhatadze GI.
    Biochemistry; 2007 Mar 13; 46(10):2876-80. PubMed ID: 17295518
    [Abstract] [Full Text] [Related]

  • 9. Fluorescence probe of Trp-cage protein conformation in solution and in gas phase.
    Iavarone AT, Patriksson A, van der Spoel D, Parks JH.
    J Am Chem Soc; 2007 May 30; 129(21):6726-35. PubMed ID: 17487969
    [Abstract] [Full Text] [Related]

  • 10. Computational design of proteins stereochemically optimized in size, stability, and folding speed.
    Joshi S, Rana S, Wangikar P, Durani S.
    Biopolymers; 2006 Oct 05; 83(2):122-34. PubMed ID: 16683262
    [Abstract] [Full Text] [Related]

  • 11. Folding kinetics of a naturally occurring helical peptide: implication of the folding speed limit of helical proteins.
    Mukherjee S, Chowdhury P, Bunagan MR, Gai F.
    J Phys Chem B; 2008 Jul 31; 112(30):9146-50. PubMed ID: 18610960
    [Abstract] [Full Text] [Related]

  • 12. Folding dynamics of Trp-cage in the presence of chemical interference and macromolecular crowding. I.
    Samiotakis A, Cheung MS.
    J Chem Phys; 2011 Nov 07; 135(17):175101. PubMed ID: 22070323
    [Abstract] [Full Text] [Related]

  • 13. Cooperation between a salt bridge and the hydrophobic core triggers fold stabilization in a Trp-cage miniprotein.
    Hudáky P, Stráner P, Farkas V, Váradi G, Tóth G, Perczel A.
    Biochemistry; 2008 Jan 22; 47(3):1007-16. PubMed ID: 18161949
    [Abstract] [Full Text] [Related]

  • 14. Understanding folding and design: replica-exchange simulations of "Trp-cage" miniproteins.
    Pitera JW, Swope W.
    Proc Natl Acad Sci U S A; 2003 Jun 24; 100(13):7587-92. PubMed ID: 12808142
    [Abstract] [Full Text] [Related]

  • 15. Simulation and experiment conspire to reveal cryptic intermediates and a slide from the nucleation-condensation to framework mechanism of folding.
    White GW, Gianni S, Grossmann JG, Jemth P, Fersht AR, Daggett V.
    J Mol Biol; 2005 Jul 22; 350(4):757-75. PubMed ID: 15967458
    [Abstract] [Full Text] [Related]

  • 16. Cooperative folding mechanism of a beta-hairpin peptide studied by a multicanonical replica-exchange molecular dynamics simulation.
    Yoda T, Sugita Y, Okamoto Y.
    Proteins; 2007 Mar 01; 66(4):846-59. PubMed ID: 17173285
    [Abstract] [Full Text] [Related]

  • 17. Kinetic analysis of molecular dynamics simulations reveals changes in the denatured state and switch of folding pathways upon single-point mutation of a beta-sheet miniprotein.
    Muff S, Caflisch A.
    Proteins; 2008 Mar 01; 70(4):1185-95. PubMed ID: 17847092
    [Abstract] [Full Text] [Related]

  • 18. Phosphorylation as conformational switch from the native to amyloid state: Trp-cage as a protein aggregation model.
    Kardos J, Kiss B, Micsonai A, Rovó P, Menyhárd DK, Kovács J, Váradi G, Tóth GK, Perczel A.
    J Phys Chem B; 2015 Feb 19; 119(7):2946-55. PubMed ID: 25625571
    [Abstract] [Full Text] [Related]

  • 19. Bulky side chains and non-native salt bridges slow down the folding of a cross-linked helical peptide: a combined molecular dynamics and time-resolved infrared spectroscopy study.
    Paoli B, Seeber M, Backus EH, Ihalainen JA, Hamm P, Caflisch A.
    J Phys Chem B; 2009 Apr 02; 113(13):4435-42. PubMed ID: 19256526
    [Abstract] [Full Text] [Related]

  • 20. Application of the accelerated molecular dynamics simulations to the folding of a small protein.
    Yang L, Grubb MP, Gao YQ.
    J Chem Phys; 2007 Mar 28; 126(12):125102. PubMed ID: 17411164
    [Abstract] [Full Text] [Related]

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