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237 related items for PubMed ID: 16533049

  • 1. Metal ion dependence, thermodynamics, and kinetics for intramolecular docking of a GAAA tetraloop and receptor connected by a flexible linker.
    Downey CD, Fiore JL, Stoddard CD, Hodak JH, Nesbitt DJ, Pardi A.
    Biochemistry; 2006 Mar 21; 45(11):3664-73. PubMed ID: 16533049
    [Abstract] [Full Text] [Related]

  • 2. Docking kinetics and equilibrium of a GAAA tetraloop-receptor motif probed by single-molecule FRET.
    Hodak JH, Downey CD, Fiore JL, Pardi A, Nesbitt DJ.
    Proc Natl Acad Sci U S A; 2005 Jul 26; 102(30):10505-10. PubMed ID: 16024731
    [Abstract] [Full Text] [Related]

  • 3. The role of counterion valence and size in GAAA tetraloop-receptor docking/undocking kinetics.
    Fiore JL, Holmstrom ED, Fiegland LR, Hodak JH, Nesbitt DJ.
    J Mol Biol; 2012 Oct 19; 423(2):198-216. PubMed ID: 22796627
    [Abstract] [Full Text] [Related]

  • 4. The GAAA tetraloop-receptor interaction contributes differentially to folding thermodynamics and kinetics for the P4-P6 RNA domain.
    Young BT, Silverman SK.
    Biochemistry; 2002 Oct 15; 41(41):12271-6. PubMed ID: 12369814
    [Abstract] [Full Text] [Related]

  • 5. Site-directed spin labeling studies reveal solution conformational changes in a GAAA tetraloop receptor upon Mg(2+)-dependent docking of a GAAA tetraloop.
    Qin PZ, Feigon J, Hubbell WL.
    J Mol Biol; 2005 Aug 05; 351(1):1-8. PubMed ID: 15993422
    [Abstract] [Full Text] [Related]

  • 6. Enthalpy-driven RNA folding: single-molecule thermodynamics of tetraloop-receptor tertiary interaction.
    Fiore JL, Kraemer B, Koberling F, Edmann R, Nesbitt DJ.
    Biochemistry; 2009 Mar 24; 48(11):2550-8. PubMed ID: 19186984
    [Abstract] [Full Text] [Related]

  • 7. Solution structure of Cobalt(III)hexammine complexed to the GAAA tetraloop, and metal-ion binding to G.A mismatches.
    Rüdisser S, Tinoco I.
    J Mol Biol; 2000 Feb 04; 295(5):1211-23. PubMed ID: 10653698
    [Abstract] [Full Text] [Related]

  • 8. An RNA folding motif: GNRA tetraloop-receptor interactions.
    Fiore JL, Nesbitt DJ.
    Q Rev Biophys; 2013 Aug 04; 46(3):223-64. PubMed ID: 23915736
    [Abstract] [Full Text] [Related]

  • 9. Probing the kinetic and thermodynamic consequences of the tetraloop/tetraloop receptor monovalent ion-binding site in P4-P6 RNA by smFRET.
    Bisaria N, Herschlag D.
    Biochem Soc Trans; 2015 Apr 04; 43(2):172-8. PubMed ID: 25849913
    [Abstract] [Full Text] [Related]

  • 10. Monovalent and divalent promoted GAAA tetraloop-receptor tertiary interactions from freely diffusing single-molecule studies.
    Fiore JL, Hodak JH, Piestert O, Downey CD, Nesbitt DJ.
    Biophys J; 2008 Oct 04; 95(8):3892-905. PubMed ID: 18621836
    [Abstract] [Full Text] [Related]

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  • 12. Quantitative analysis of the isolated GAAA tetraloop/receptor interaction in solution: a site-directed spin labeling study.
    Qin PZ, Butcher SE, Feigon J, Hubbell WL.
    Biochemistry; 2001 Jun 12; 40(23):6929-36. PubMed ID: 11389608
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  • 14. Tests of Kramers' Theory at the Single-Molecule Level: Evidence for Folding of an Isolated RNA Tertiary Interaction at the Viscous Speed Limit.
    Dupuis NF, Holmstrom ED, Nesbitt DJ.
    J Phys Chem B; 2018 Sep 27; 122(38):8796-8804. PubMed ID: 30078323
    [Abstract] [Full Text] [Related]

  • 15. Solution structure of a GAAA tetraloop receptor RNA.
    Butcher SE, Dieckmann T, Feigon J.
    EMBO J; 1997 Dec 15; 16(24):7490-9. PubMed ID: 9405377
    [Abstract] [Full Text] [Related]

  • 16. RNA helical packing in solution: NMR structure of a 30 kDa GAAA tetraloop-receptor complex.
    Davis JH, Tonelli M, Scott LG, Jaeger L, Williamson JR, Butcher SE.
    J Mol Biol; 2005 Aug 12; 351(2):371-82. PubMed ID: 16002091
    [Abstract] [Full Text] [Related]

  • 17. Role of metal ions in the tetraloop-receptor complex as analyzed by NMR.
    Davis JH, Foster TR, Tonelli M, Butcher SE.
    RNA; 2007 Jan 12; 13(1):76-86. PubMed ID: 17119098
    [Abstract] [Full Text] [Related]

  • 18. Binding of an aminoacridine derivative to a GAAA RNA tetraloop.
    Yan Z, Baranger AM.
    Bioorg Med Chem Lett; 2004 Dec 06; 14(23):5889-93. PubMed ID: 15501063
    [Abstract] [Full Text] [Related]

  • 19. Exploring the electrostatic energy landscape for tetraloop-receptor docking.
    He Z, Zhu Y, Chen SJ.
    Phys Chem Chem Phys; 2014 Apr 14; 16(14):6367-75. PubMed ID: 24322001
    [Abstract] [Full Text] [Related]

  • 20. Thermodynamic origins of monovalent facilitated RNA folding.
    Holmstrom ED, Fiore JL, Nesbitt DJ.
    Biochemistry; 2012 May 08; 51(18):3732-43. PubMed ID: 22448852
    [Abstract] [Full Text] [Related]

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