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Journal Abstract Search

289 related items for PubMed ID: 16549017

  • 1. More robust detection of motifs in coexpressed genes by using phylogenetic information.
    Monsieurs P, Thijs G, Fadda AA, De Keersmaecker SC, Vanderleyden J, De Moor B, Marchal K.
    BMC Bioinformatics; 2006 Mar 20; 7():160. PubMed ID: 16549017
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  • 4. Condition-specific coregulation with cis-regulatory motifs and modules in the mouse genome.
    Choi D, Fang Y, Mathers WD.
    Genomics; 2006 Apr 20; 87(4):500-8. PubMed ID: 16431075
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  • 5. Nucleotide variation of regulatory motifs may lead to distinct expression patterns.
    Segal L, Lapidot M, Solan Z, Ruppin E, Pilpel Y, Horn D.
    Bioinformatics; 2007 Jul 01; 23(13):i440-9. PubMed ID: 17646329
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  • 8. Phylogeny based discovery of regulatory elements.
    Gertz J, Fay JC, Cohen BA.
    BMC Bioinformatics; 2006 May 22; 7():266. PubMed ID: 16716228
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  • 10. A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length.
    Favorov AV, Gelfand MS, Gerasimova AV, Ravcheev DA, Mironov AA, Makeev VJ.
    Bioinformatics; 2005 May 15; 21(10):2240-5. PubMed ID: 15728117
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  • 11. Comparative genomic analysis of allatostatin-encoding (Ast) genes in Drosophila species and prediction of regulatory elements by phylogenetic footprinting.
    Bowser PR, Tobe SS.
    Peptides; 2007 Jan 15; 28(1):83-93. PubMed ID: 17175069
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  • 13. MotifCombinator: a web-based tool to search for combinations of cis-regulatory motifs.
    Kato M, Tsunoda T.
    BMC Bioinformatics; 2007 Mar 22; 8():100. PubMed ID: 17378935
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  • 15. Array2BIO: from microarray expression data to functional annotation of co-regulated genes.
    Loots GG, Chain PS, Mabery S, Rasley A, Garcia E, Ovcharenko I.
    BMC Bioinformatics; 2006 Jun 16; 7():307. PubMed ID: 16780584
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  • 16. Combining phylogenetic data with co-regulated genes to identify regulatory motifs.
    Wang T, Stormo GD.
    Bioinformatics; 2003 Dec 12; 19(18):2369-80. PubMed ID: 14668220
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  • 17. Complementary techniques of clustering and composite pattern analysis to Saccharomyces cerevisiae gene expression.
    Magusin A.
    Appl Bioinformatics; 2003 Dec 12; 2(3 Suppl):S37-46. PubMed ID: 15130815
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  • 19. A mathematical and computational framework for quantitative comparison and integration of large-scale gene expression data.
    Hart CE, Sharenbroich L, Bornstein BJ, Trout D, King B, Mjolsness E, Wold BJ.
    Nucleic Acids Res; 2005 Dec 12; 33(8):2580-94. PubMed ID: 15886390
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  • 20. Identification of putative regulatory upstream ORFs in the yeast genome using heuristics and evolutionary conservation.
    Cvijović M, Dalevi D, Bilsland E, Kemp GJ, Sunnerhagen P.
    BMC Bioinformatics; 2007 Aug 08; 8():295. PubMed ID: 17686169
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