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983 related items for PubMed ID: 16683262

  • 1. Computational design of proteins stereochemically optimized in size, stability, and folding speed.
    Joshi S, Rana S, Wangikar P, Durani S.
    Biopolymers; 2006 Oct 05; 83(2):122-34. PubMed ID: 16683262
    [Abstract] [Full Text] [Related]

  • 2. Protein design with L- and D-alpha-amino acid structures as the alphabet.
    Durani S.
    Acc Chem Res; 2008 Oct 05; 41(10):1301-8. PubMed ID: 18642934
    [Abstract] [Full Text] [Related]

  • 3. Simulated folding in polypeptides of diversified molecular tacticity: implications for protein folding and de novo design.
    Ramakrishnan V, Ranbhor R, Durani S.
    Biopolymers; 2005 Jun 05; 78(2):96-105. PubMed ID: 15690413
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  • 4. Understanding the role of the topology in protein folding by computational inverse folding experiments.
    Mucherino A, Costantini S, di Serafino D, D'Apuzzo M, Facchiano A, Colonna G.
    Comput Biol Chem; 2008 Aug 05; 32(4):233-9. PubMed ID: 18479970
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  • 5. Folding the main chain of small proteins with the genetic algorithm.
    Dandekar T, Argos P.
    J Mol Biol; 1994 Feb 25; 236(3):844-61. PubMed ID: 8114098
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  • 6. Mechanism-based protein design: attempted "nucleation-condensation" approach to a possible minimal helix-bundle protein.
    Mohanraja K, Dhanasekaran M, Kundu B, Durani S.
    Biopolymers; 2003 Oct 25; 70(3):355-63. PubMed ID: 14579308
    [Abstract] [Full Text] [Related]

  • 7. Folding mechanisms of proteins with high sequence identity but different folds.
    Scott KA, Daggett V.
    Biochemistry; 2007 Feb 13; 46(6):1545-56. PubMed ID: 17279619
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  • 8. A tale of two secondary structure elements: when a beta-hairpin becomes an alpha-helix.
    Cregut D, Civera C, Macias MJ, Wallon G, Serrano L.
    J Mol Biol; 1999 Sep 17; 292(2):389-401. PubMed ID: 10493883
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  • 11. Kinetics and thermodynamics of folding of a de novo designed four-helix bundle protein.
    Guo Z, Thirumalai D.
    J Mol Biol; 1996 Oct 25; 263(2):323-43. PubMed ID: 8913310
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  • 13. Computer simulations of the properties of the alpha2, alpha2C, and alpha2D de novo designed helical proteins.
    Sikorski A, Kolinski A, Skolnick J.
    Proteins; 2000 Jan 01; 38(1):17-28. PubMed ID: 10651035
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  • 14. Computational simulations of protein folding to engineer amino acid sequences to encourage desired supersecondary structure formation.
    Gerstman BS, Chapagain PP.
    Methods Mol Biol; 2013 Jan 01; 932():191-204. PubMed ID: 22987354
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  • 15. Probing possible downhill folding: native contact topology likely places a significant constraint on the folding cooperativity of proteins with approximately 40 residues.
    Badasyan A, Liu Z, Chan HS.
    J Mol Biol; 2008 Dec 12; 384(2):512-30. PubMed ID: 18823994
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  • 16. A designed branched three-helix bundle protein dimer.
    Dolphin GT.
    J Am Chem Soc; 2006 Jun 07; 128(22):7287-90. PubMed ID: 16734482
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  • 17. Characterization and further stabilization of designed ankyrin repeat proteins by combining molecular dynamics simulations and experiments.
    Interlandi G, Wetzel SK, Settanni G, Plückthun A, Caflisch A.
    J Mol Biol; 2008 Jan 18; 375(3):837-54. PubMed ID: 18048057
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  • 18. Folding a de novo designed peptide into an alpha-helix through hydrophobic binding by a bowl-shaped host.
    Tashiro S, Tominaga M, Yamaguchi Y, Kato K, Fujita M.
    Angew Chem Int Ed Engl; 2005 Dec 23; 45(2):241-4. PubMed ID: 16312001
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