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Journal Abstract Search


160 related items for PubMed ID: 16722767

  • 1. Free energy simulations of uncatalyzed DNA replication fidelity: structure and stability of T.G and dTTP.G terminal DNA mismatches flanked by a single dangling nucleotide.
    Bren U, Martínek V, Florian J.
    J Phys Chem B; 2006 Jun 01; 110(21):10557-66. PubMed ID: 16722767
    [Abstract] [Full Text] [Related]

  • 2. Thermodynamic characterization of single mismatches found in naturally occurring RNA.
    Davis AR, Znosko BM.
    Biochemistry; 2007 Nov 20; 46(46):13425-36. PubMed ID: 17958380
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  • 3. Thermodynamics of RNA duplexes with tandem mismatches containing a uracil-uracil pair flanked by C.G/G.C or G.C/A.U closing base pairs.
    Bourdélat-Parks BN, Wartell RM.
    Biochemistry; 2005 Dec 20; 44(50):16710-7. PubMed ID: 16342961
    [Abstract] [Full Text] [Related]

  • 4. Examining methods for calculations of binding free energies: LRA, LIE, PDLD-LRA, and PDLD/S-LRA calculations of ligands binding to an HIV protease.
    Sham YY, Chu ZT, Tao H, Warshel A.
    Proteins; 2000 Jun 01; 39(4):393-407. PubMed ID: 10813821
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  • 5. Computer simulation of the chemical catalysis of DNA polymerases: discriminating between alternative nucleotide insertion mechanisms for T7 DNA polymerase.
    Florián J, Goodman MF, Warshel A.
    J Am Chem Soc; 2003 Jul 09; 125(27):8163-77. PubMed ID: 12837086
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  • 6. Comparison of intrinsic stacking energies of ten unique dinucleotide steps in A-RNA and B-DNA duplexes. Can we determine correct order of stability by quantum-chemical calculations?
    Svozil D, Hobza P, Sponer J.
    J Phys Chem B; 2010 Jan 21; 114(2):1191-203. PubMed ID: 20000584
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  • 7. Stability of RNA hairpins closed by wobble base pairs.
    Giese MR, Betschart K, Dale T, Riley CK, Rowan C, Sprouse KJ, Serra MJ.
    Biochemistry; 1998 Jan 27; 37(4):1094-100. PubMed ID: 9454601
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  • 8. Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A.A, C.C, G.G, and T.T mismatches.
    Peyret N, Seneviratne PA, Allawi HT, SantaLucia J.
    Biochemistry; 1999 Mar 23; 38(12):3468-77. PubMed ID: 10090733
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  • 14. Fidelity of mispair formation and mispair extension is dependent on the interaction between the minor groove of the primer terminus and Arg668 of DNA polymerase I of Escherichia coli.
    McCain MD, Meyer AS, Schultz SS, Glekas A, Spratt TE.
    Biochemistry; 2005 Apr 19; 44(15):5647-59. PubMed ID: 15823023
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  • 17. DNA duplex stability: the role of preorganized electrostatics.
    Bren U, Lah J, Bren M, Martínek V, Florián J.
    J Phys Chem B; 2010 Mar 04; 114(8):2876-85. PubMed ID: 20131770
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  • 18. Factors determining the deriving force of DNA formation: geometrical differences of base pairs, dehydration of bases, and the arginine assisting.
    Sun L, Cukier RI, Bu Y.
    J Phys Chem B; 2007 Feb 22; 111(7):1802-8. PubMed ID: 17266349
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