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Journal Abstract Search

216 related items for PubMed ID: 16738133

  • 1. Protein complex compositions predicted by structural similarity.
    Davis FP, Braberg H, Shen MY, Pieper U, Sali A, Madhusudhan MS.
    Nucleic Acids Res; 2006; 34(10):2943-52. PubMed ID: 16738133
    [Abstract] [Full Text] [Related]

  • 2. MODBASE: a database of annotated comparative protein structure models and associated resources.
    Pieper U, Eswar N, Davis FP, Braberg H, Madhusudhan MS, Rossi A, Marti-Renom M, Karchin R, Webb BM, Eramian D, Shen MY, Kelly L, Melo F, Sali A.
    Nucleic Acids Res; 2006 Jan 01; 34(Database issue):D291-5. PubMed ID: 16381869
    [Abstract] [Full Text] [Related]

  • 3. MODBASE, a database of annotated comparative protein structure models, and associated resources.
    Pieper U, Eswar N, Braberg H, Madhusudhan MS, Davis FP, Stuart AC, Mirkovic N, Rossi A, Marti-Renom MA, Fiser A, Webb B, Greenblatt D, Huang CC, Ferrin TE, Sali A.
    Nucleic Acids Res; 2004 Jan 01; 32(Database issue):D217-22. PubMed ID: 14681398
    [Abstract] [Full Text] [Related]

  • 4. PIBASE: a comprehensive database of structurally defined protein interfaces.
    Davis FP, Sali A.
    Bioinformatics; 2005 May 01; 21(9):1901-7. PubMed ID: 15657096
    [Abstract] [Full Text] [Related]

  • 5. Identifying protein complexes using hybrid properties.
    Chen L, Shi X, Kong X, Zeng Z, Cai YD.
    J Proteome Res; 2009 Nov 01; 8(11):5212-8. PubMed ID: 19764809
    [Abstract] [Full Text] [Related]

  • 6. ModBase, a database of annotated comparative protein structure models and associated resources.
    Pieper U, Webb BM, Dong GQ, Schneidman-Duhovny D, Fan H, Kim SJ, Khuri N, Spill YG, Weinkam P, Hammel M, Tainer JA, Nilges M, Sali A.
    Nucleic Acids Res; 2014 Jan 01; 42(Database issue):D336-46. PubMed ID: 24271400
    [Abstract] [Full Text] [Related]

  • 7. Characterization and prediction of protein-protein interactions within and between complexes.
    Sprinzak E, Altuvia Y, Margalit H.
    Proc Natl Acad Sci U S A; 2006 Oct 03; 103(40):14718-23. PubMed ID: 17003128
    [Abstract] [Full Text] [Related]

  • 8. A degree-distribution based hierarchical agglomerative clustering algorithm for protein complexes identification.
    Yu L, Gao L, Li K, Zhao Y, Chiu DK.
    Comput Biol Chem; 2011 Oct 12; 35(5):298-307. PubMed ID: 22000801
    [Abstract] [Full Text] [Related]

  • 9. Structural templates for comparative protein docking.
    Anishchenko I, Kundrotas PJ, Tuzikov AV, Vakser IA.
    Proteins; 2015 Sep 12; 83(9):1563-70. PubMed ID: 25488330
    [Abstract] [Full Text] [Related]

  • 10. Analysis of Three-Dimensional Structures of Exocyst Components.
    Lesigang J, Dong G.
    Methods Mol Biol; 2016 Sep 12; 1369():191-204. PubMed ID: 26519314
    [Abstract] [Full Text] [Related]

  • 11. Discover protein complexes in protein-protein interaction networks using parametric local modularity.
    Kim J, Tan K.
    BMC Bioinformatics; 2010 Oct 19; 11():521. PubMed ID: 20958996
    [Abstract] [Full Text] [Related]

  • 12. A computationally guided protein-interaction screen uncovers coiled-coil interactions involved in vesicular trafficking.
    Zhang H, Chen J, Wang Y, Peng L, Dong X, Lu Y, Keating AE, Jiang T.
    J Mol Biol; 2009 Sep 11; 392(1):228-41. PubMed ID: 19591838
    [Abstract] [Full Text] [Related]

  • 13. MODBASE, a database of annotated comparative protein structure models and associated resources.
    Pieper U, Eswar N, Webb BM, Eramian D, Kelly L, Barkan DT, Carter H, Mankoo P, Karchin R, Marti-Renom MA, Davis FP, Sali A.
    Nucleic Acids Res; 2009 Jan 11; 37(Database issue):D347-54. PubMed ID: 18948282
    [Abstract] [Full Text] [Related]

  • 14. Docking and scoring protein interactions: CAPRI 2009.
    Lensink MF, Wodak SJ.
    Proteins; 2010 Nov 15; 78(15):3073-84. PubMed ID: 20806235
    [Abstract] [Full Text] [Related]

  • 15. Interaction graph mining for protein complexes using local clique merging.
    Li XL, Tan SH, Foo CS, Ng SK.
    Genome Inform; 2005 Nov 15; 16(2):260-9. PubMed ID: 16901108
    [Abstract] [Full Text] [Related]

  • 16. AVID: an integrative framework for discovering functional relationships among proteins.
    Jiang T, Keating AE.
    BMC Bioinformatics; 2005 Jun 01; 6():136. PubMed ID: 15929793
    [Abstract] [Full Text] [Related]

  • 17. ModBase, a database of annotated comparative protein structure models, and associated resources.
    Pieper U, Webb BM, Barkan DT, Schneidman-Duhovny D, Schlessinger A, Braberg H, Yang Z, Meng EC, Pettersen EF, Huang CC, Datta RS, Sampathkumar P, Madhusudhan MS, Sjölander K, Ferrin TE, Burley SK, Sali A.
    Nucleic Acids Res; 2011 Jan 01; 39(Database issue):D465-74. PubMed ID: 21097780
    [Abstract] [Full Text] [Related]

  • 18. Predicting protein-protein interactions from protein domains using a set cover approach.
    Huang C, Morcos F, Kanaan SP, Wuchty S, Chen DZ, Izaguirre JA.
    IEEE/ACM Trans Comput Biol Bioinform; 2007 Jan 01; 4(1):78-87. PubMed ID: 17277415
    [Abstract] [Full Text] [Related]

  • 19. Statistical analysis of domains in interacting protein pairs.
    Nye TM, Berzuini C, Gilks WR, Babu MM, Teichmann SA.
    Bioinformatics; 2005 Apr 01; 21(7):993-1001. PubMed ID: 15509600
    [Abstract] [Full Text] [Related]

  • 20. Probabilistic prediction and ranking of human protein-protein interactions.
    Scott MS, Barton GJ.
    BMC Bioinformatics; 2007 Jul 05; 8():239. PubMed ID: 17615067
    [Abstract] [Full Text] [Related]

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