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Journal Abstract Search

98 related items for PubMed ID: 16781176

  • 1. Empirical rules facilitate the search for binding sites on protein surfaces.
    te Heesen H, Schlitter AM, Schlitter J.
    J Mol Graph Model; 2007 Jan; 25(5):671-9. PubMed ID: 16781176
    [Abstract] [Full Text] [Related]

  • 2. Toward the fast blind docking of a peptide to a target protein by using a four-body statistical pseudo-potential.
    Aita T, Nishigaki K, Husimi Y.
    Comput Biol Chem; 2010 Feb; 34(1):53-62. PubMed ID: 19939735
    [Abstract] [Full Text] [Related]

  • 3. Molecular surface complementarity at protein-protein interfaces: the critical role played by surface normals at well placed, sparse, points in docking.
    Norel R, Lin SL, Wolfson HJ, Nussinov R.
    J Mol Biol; 1995 Sep 15; 252(2):263-73. PubMed ID: 7674306
    [Abstract] [Full Text] [Related]

  • 4. EADock: docking of small molecules into protein active sites with a multiobjective evolutionary optimization.
    Grosdidier A, Zoete V, Michielin O.
    Proteins; 2007 Jun 01; 67(4):1010-25. PubMed ID: 17380512
    [Abstract] [Full Text] [Related]

  • 5. Automated docking of substrates to proteins by simulated annealing.
    Goodsell DS, Olson AJ.
    Proteins; 1990 Jun 01; 8(3):195-202. PubMed ID: 2281083
    [Abstract] [Full Text] [Related]

  • 6. Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites.
    Najmanovich R, Kurbatova N, Thornton J.
    Bioinformatics; 2008 Aug 15; 24(16):i105-11. PubMed ID: 18689810
    [Abstract] [Full Text] [Related]

  • 7. Binding response: a descriptor for selecting ligand binding site on protein surfaces.
    Zhong S, MacKerell AD.
    J Chem Inf Model; 2007 Aug 15; 47(6):2303-15. PubMed ID: 17900106
    [Abstract] [Full Text] [Related]

  • 8. BSAlign: a rapid graph-based algorithm for detecting ligand-binding sites in protein structures.
    Aung Z, Tong JC.
    Genome Inform; 2008 Aug 15; 21():65-76. PubMed ID: 19425148
    [Abstract] [Full Text] [Related]

  • 9. Protein-protein binding-sites prediction by protein surface structure conservation.
    Konc J, Janezic D.
    J Chem Inf Model; 2007 Aug 15; 47(3):940-4. PubMed ID: 17388583
    [Abstract] [Full Text] [Related]

  • 10. Carbohydrate-binding proteins: Dissecting ligand structures through solvent environment occupancy.
    Gauto DF, Di Lella S, Guardia CM, Estrin DA, Martí MA.
    J Phys Chem B; 2009 Jun 25; 113(25):8717-24. PubMed ID: 19485380
    [Abstract] [Full Text] [Related]

  • 11. Form follows function: shape analysis of protein cavities for receptor-based drug design.
    Weisel M, Proschak E, Kriegl JM, Schneider G.
    Proteomics; 2009 Jan 25; 9(2):451-9. PubMed ID: 19142949
    [Abstract] [Full Text] [Related]

  • 12. Pocket extraction on proteins via the Voronoi diagram of spheres.
    Kim D, Cho CH, Cho Y, Ryu J, Bhak J, Kim DS.
    J Mol Graph Model; 2008 Apr 25; 26(7):1104-12. PubMed ID: 18023220
    [Abstract] [Full Text] [Related]

  • 13. Detection of pockets on protein surfaces using small and large probe spheres to find putative ligand binding sites.
    Kawabata T, Go N.
    Proteins; 2007 Aug 01; 68(2):516-29. PubMed ID: 17444522
    [Abstract] [Full Text] [Related]

  • 14. Importance of molecular computer modeling in anticancer drug development.
    Geromichalos GD.
    J BUON; 2007 Sep 01; 12 Suppl 1():S101-18. PubMed ID: 17935268
    [Abstract] [Full Text] [Related]

  • 15. The use of protein-ligand interaction fingerprints in docking.
    Brewerton SC.
    Curr Opin Drug Discov Devel; 2008 May 01; 11(3):356-64. PubMed ID: 18428089
    [Abstract] [Full Text] [Related]

  • 16. New method for fast and accurate binding-site identification and analysis.
    Halgren T.
    Chem Biol Drug Des; 2007 Feb 01; 69(2):146-8. PubMed ID: 17381729
    [Abstract] [Full Text] [Related]

  • 17. Volatile anesthetic binding to proteins is influenced by solvent and aliphatic residues.
    Streiff JH, Jones KA.
    J Chem Inf Model; 2008 Oct 01; 48(10):2066-73. PubMed ID: 18808106
    [Abstract] [Full Text] [Related]

  • 18. eF-seek: prediction of the functional sites of proteins by searching for similar electrostatic potential and molecular surface shape.
    Kinoshita K, Murakami Y, Nakamura H.
    Nucleic Acids Res; 2007 Jul 01; 35(Web Server issue):W398-402. PubMed ID: 17567616
    [Abstract] [Full Text] [Related]

  • 19. Detection of multiscale pockets on protein surfaces using mathematical morphology.
    Kawabata T.
    Proteins; 2010 Apr 01; 78(5):1195-211. PubMed ID: 19938154
    [Abstract] [Full Text] [Related]

  • 20. Protein surface conservation in binding sites.
    Carl N, Konc J, Janezic D.
    J Chem Inf Model; 2008 Jun 01; 48(6):1279-86. PubMed ID: 18476685
    [Abstract] [Full Text] [Related]

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