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Journal Abstract Search

353 related items for PubMed ID: 16809393

  • 1. An iterative refinement algorithm for consistency based multiple structural alignment methods.
    Chen Y, Crippen GM.
    Bioinformatics; 2006 Sep 01; 22(17):2087-93. PubMed ID: 16809393
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  • 3. Multi-RELIEF: a method to recognize specificity determining residues from multiple sequence alignments using a Machine-Learning approach for feature weighting.
    Ye K, Feenstra KA, Heringa J, Ijzerman AP, Marchiori E.
    Bioinformatics; 2008 Jan 01; 24(1):18-25. PubMed ID: 18024975
    [Abstract] [Full Text] [Related]

  • 4. A new progressive-iterative algorithm for multiple structure alignment.
    Lupyan D, Leo-Macias A, Ortiz AR.
    Bioinformatics; 2005 Aug 01; 21(15):3255-63. PubMed ID: 15941743
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  • 5. MUSTANG: a multiple structural alignment algorithm.
    Konagurthu AS, Whisstock JC, Stuckey PJ, Lesk AM.
    Proteins; 2006 Aug 15; 64(3):559-74. PubMed ID: 16736488
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  • 6. A word-oriented approach to alignment validation.
    Beiko RG, Chan CX, Ragan MA.
    Bioinformatics; 2005 May 15; 21(10):2230-9. PubMed ID: 15728118
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  • 7. SVM-HUSTLE--an iterative semi-supervised machine learning approach for pairwise protein remote homology detection.
    Shah AR, Oehmen CS, Webb-Robertson BJ.
    Bioinformatics; 2008 Mar 15; 24(6):783-90. PubMed ID: 18245127
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  • 8. SPEM: improving multiple sequence alignment with sequence profiles and predicted secondary structures.
    Zhou H, Zhou Y.
    Bioinformatics; 2005 Sep 15; 21(18):3615-21. PubMed ID: 16020471
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  • 9. Development and validation of a consistency based multiple structure alignment algorithm.
    Ebert J, Brutlag D.
    Bioinformatics; 2006 May 01; 22(9):1080-7. PubMed ID: 16473868
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  • 10. CAALIGN: a program for pairwise and multiple protein-structure alignment.
    Oldfield TJ.
    Acta Crystallogr D Biol Crystallogr; 2007 Apr 01; 63(Pt 4):514-25. PubMed ID: 17372357
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  • 11. Multiple alignment by sequence annealing.
    Schwartz AS, Pachter L.
    Bioinformatics; 2007 Jan 15; 23(2):e24-9. PubMed ID: 17237099
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  • 12. Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments.
    Gotoh O.
    J Mol Biol; 1996 Dec 13; 264(4):823-38. PubMed ID: 8980688
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  • 16. Sigma: multiple alignment of weakly-conserved non-coding DNA sequence.
    Siddharthan R.
    BMC Bioinformatics; 2006 Mar 16; 7():143. PubMed ID: 16542424
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  • 17. Predicting protein structure classes from function predictions.
    Sommer I, Rahnenführer J, Domingues FS, de Lichtenberg U, Lengauer T.
    Bioinformatics; 2004 Mar 22; 20(5):770-6. PubMed ID: 14751994
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  • 18. Prediction of protein structural class with Rough Sets.
    Cao Y, Liu S, Zhang L, Qin J, Wang J, Tang K.
    BMC Bioinformatics; 2006 Jan 14; 7():20. PubMed ID: 16412240
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  • 19. A structural alignment kernel for protein structures.
    Qiu J, Hue M, Ben-Hur A, Vert JP, Noble WS.
    Bioinformatics; 2007 May 01; 23(9):1090-8. PubMed ID: 17234638
    [Abstract] [Full Text] [Related]

  • 20. Supervised identification of allergen-representative peptides for in silico detection of potentially allergenic proteins.
    Björklund AK, Soeria-Atmadja D, Zorzet A, Hammerling U, Gustafsson MG.
    Bioinformatics; 2005 Jan 01; 21(1):39-50. PubMed ID: 15319257
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