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Journal Abstract Search

353 related items for PubMed ID: 16809393

  • 21. Incremental window-based protein sequence alignment algorithms.
    Rangwala H, Karypis G.
    Bioinformatics; 2007 Jan 15; 23(2):e17-23. PubMed ID: 17237087
    [Abstract] [Full Text] [Related]

  • 22. A min-cut algorithm for the consistency problem in multiple sequence alignment.
    Corel E, Pitschi F, Morgenstern B.
    Bioinformatics; 2010 Apr 15; 26(8):1015-21. PubMed ID: 20189940
    [Abstract] [Full Text] [Related]

  • 23. Semi-supervised protein classification using cluster kernels.
    Weston J, Leslie C, Ie E, Zhou D, Elisseeff A, Noble WS.
    Bioinformatics; 2005 Aug 01; 21(15):3241-7. PubMed ID: 15905279
    [Abstract] [Full Text] [Related]

  • 24. T-Coffee: A novel method for fast and accurate multiple sequence alignment.
    Notredame C, Higgins DG, Heringa J.
    J Mol Biol; 2000 Sep 08; 302(1):205-17. PubMed ID: 10964570
    [Abstract] [Full Text] [Related]

  • 25. Support vector machines with profile-based kernels for remote protein homology detection.
    Busuttil S, Abela J, Pace GJ.
    Genome Inform; 2004 Sep 08; 15(2):191-200. PubMed ID: 15706505
    [Abstract] [Full Text] [Related]

  • 26. An efficient, versatile and scalable pattern growth approach to mine frequent patterns in unaligned protein sequences.
    Ye K, Kosters WA, Ijzerman AP.
    Bioinformatics; 2007 Mar 15; 23(6):687-93. PubMed ID: 17237070
    [Abstract] [Full Text] [Related]

  • 27. Multiple alignment by aligning alignments.
    Wheeler TJ, Kececioglu JD.
    Bioinformatics; 2007 Jul 01; 23(13):i559-68. PubMed ID: 17646343
    [Abstract] [Full Text] [Related]

  • 28. Optimizing the size of the sequence profiles to increase the accuracy of protein sequence alignments generated by profile-profile algorithms.
    Poleksic A, Fienup M.
    Bioinformatics; 2008 May 01; 24(9):1145-53. PubMed ID: 18337259
    [Abstract] [Full Text] [Related]

  • 29. Extracting multiple structural alignments from pairwise alignments: a comparison of a rigorous and a heuristic approach.
    Sandelin E.
    Bioinformatics; 2005 Apr 01; 21(7):1002-9. PubMed ID: 15531607
    [Abstract] [Full Text] [Related]

  • 30. FORTE: a profile-profile comparison tool for protein fold recognition.
    Tomii K, Akiyama Y.
    Bioinformatics; 2004 Mar 01; 20(4):594-5. PubMed ID: 14764565
    [Abstract] [Full Text] [Related]

  • 31. Modeling protein loops with knowledge-based prediction of sequence-structure alignment.
    Peng HP, Yang AS.
    Bioinformatics; 2007 Nov 01; 23(21):2836-42. PubMed ID: 17827204
    [Abstract] [Full Text] [Related]

  • 32. Algorithms for optimal protein structure alignment.
    Poleksic A.
    Bioinformatics; 2009 Nov 01; 25(21):2751-6. PubMed ID: 19734152
    [Abstract] [Full Text] [Related]

  • 33. Detecting protein dissimilarities in multiple alignments using Bayesian variable selection.
    Kim S, Tsai J, Kagiampakis I, LiWang P, Vannucci M.
    Bioinformatics; 2007 Jan 15; 23(2):245-6. PubMed ID: 17105719
    [Abstract] [Full Text] [Related]

  • 34. MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities.
    Liu Y, Schmidt B, Maskell DL.
    Bioinformatics; 2010 Aug 15; 26(16):1958-64. PubMed ID: 20576627
    [Abstract] [Full Text] [Related]

  • 35. SSMap: a new UniProt-PDB mapping resource for the curation of structural-related information in the UniProt/Swiss-Prot Knowledgebase.
    David FP, Yip YL.
    BMC Bioinformatics; 2008 Sep 23; 9():391. PubMed ID: 18811932
    [Abstract] [Full Text] [Related]

  • 36. Bayesian search of functionally divergent protein subgroups and their function specific residues.
    Marttinen P, Corander J, Törönen P, Holm L.
    Bioinformatics; 2006 Oct 15; 22(20):2466-74. PubMed ID: 16870932
    [Abstract] [Full Text] [Related]

  • 37. Multiple protein sequence alignment from tertiary structure comparison: assignment of global and residue confidence levels.
    Russell RB, Barton GJ.
    Proteins; 1992 Oct 15; 14(2):309-23. PubMed ID: 1409577
    [Abstract] [Full Text] [Related]

  • 38. Murlet: a practical multiple alignment tool for structural RNA sequences.
    Kiryu H, Tabei Y, Kin T, Asai K.
    Bioinformatics; 2007 Jul 01; 23(13):1588-98. PubMed ID: 17459961
    [Abstract] [Full Text] [Related]

  • 39. Multiple mapping method: a novel approach to the sequence-to-structure alignment problem in comparative protein structure modeling.
    Rai BK, Fiser A.
    Proteins; 2006 May 15; 63(3):644-61. PubMed ID: 16437570
    [Abstract] [Full Text] [Related]

  • 40. Predicting disulfide connectivity from protein sequence using multiple sequence feature vectors and secondary structure.
    Song J, Yuan Z, Tan H, Huber T, Burrage K.
    Bioinformatics; 2007 Dec 01; 23(23):3147-54. PubMed ID: 17942444
    [Abstract] [Full Text] [Related]

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