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Journal Abstract Search

294 related items for PubMed ID: 16842615

  • 1. Optimised amino acid specific weighting factors for unbound protein docking.
    Heuser P, Schomburg D.
    BMC Bioinformatics; 2006 Jul 14; 7():344. PubMed ID: 16842615
    [Abstract] [Full Text] [Related]

  • 2. Combination of scoring schemes for protein docking.
    Heuser P, Schomburg D.
    BMC Bioinformatics; 2007 Aug 01; 8():279. PubMed ID: 17678526
    [Abstract] [Full Text] [Related]

  • 3. Improving CAPRI predictions: optimized desolvation for rigid-body docking.
    Fernández-Recio J, Abagyan R, Totrov M.
    Proteins; 2005 Aug 01; 60(2):308-13. PubMed ID: 15981266
    [Abstract] [Full Text] [Related]

  • 4. Biologically enhanced sampling geometric docking and backbone flexibility treatment with multiconformational superposition.
    Ma XH, Li CH, Shen LZ, Gong XQ, Chen WZ, Wang CX.
    Proteins; 2005 Aug 01; 60(2):319-23. PubMed ID: 15981260
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  • 6. Development and testing of an automated approach to protein docking.
    Tovchigrechko A, Vakser IA.
    Proteins; 2005 Aug 01; 60(2):296-301. PubMed ID: 15981259
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  • 7. Inherent limitations in protein-protein docking procedures.
    Kowalsman N, Eisenstein M.
    Bioinformatics; 2007 Feb 15; 23(4):421-6. PubMed ID: 17040920
    [Abstract] [Full Text] [Related]

  • 8. Complex-type-dependent scoring functions in protein-protein docking.
    Li CH, Ma XH, Shen LZ, Chang S, Chen WZ, Wang CX.
    Biophys Chem; 2007 Aug 15; 129(1):1-10. PubMed ID: 17540496
    [Abstract] [Full Text] [Related]

  • 9. Combinatorial docking approach for structure prediction of large proteins and multi-molecular assemblies.
    Inbar Y, Benyamini H, Nussinov R, Wolfson HJ.
    Phys Biol; 2005 Nov 09; 2(4):S156-65. PubMed ID: 16280621
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  • 10. Docking prediction using biological information, ZDOCK sampling technique, and clustering guided by the DFIRE statistical energy function.
    Zhang C, Liu S, Zhou Y.
    Proteins; 2005 Aug 01; 60(2):314-8. PubMed ID: 15981255
    [Abstract] [Full Text] [Related]

  • 11. Implicit flexibility in protein docking: cross-docking and local refinement.
    Król M, Chaleil RA, Tournier AL, Bates PA.
    Proteins; 2007 Dec 01; 69(4):750-7. PubMed ID: 17671977
    [Abstract] [Full Text] [Related]

  • 12. ATTRACT: protein-protein docking in CAPRI using a reduced protein model.
    Zacharias M.
    Proteins; 2005 Aug 01; 60(2):252-6. PubMed ID: 15981270
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  • 14. DOCKGROUND system of databases for protein recognition studies: unbound structures for docking.
    Gao Y, Douguet D, Tovchigrechko A, Vakser IA.
    Proteins; 2007 Dec 01; 69(4):845-51. PubMed ID: 17803215
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  • 15. RosettaDock in CAPRI rounds 6-12.
    Wang C, Schueler-Furman O, Andre I, London N, Fleishman SJ, Bradley P, Qian B, Baker D.
    Proteins; 2007 Dec 01; 69(4):758-63. PubMed ID: 17671979
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  • 17. Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space.
    Fromer M, Yanover C.
    Proteins; 2009 May 15; 75(3):682-705. PubMed ID: 19003998
    [Abstract] [Full Text] [Related]

  • 18. Docking unbound proteins with MIAX: a novel algorithm for protein-protein soft docking.
    Del Carpio Munoz CA, Peissker T, Yoshimori A, Ichiishi E.
    Genome Inform; 2003 May 15; 14():238-49. PubMed ID: 15706538
    [Abstract] [Full Text] [Related]

  • 19. Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures.
    Méndez R, Leplae R, Lensink MF, Wodak SJ.
    Proteins; 2005 Aug 01; 60(2):150-69. PubMed ID: 15981261
    [Abstract] [Full Text] [Related]

  • 20. Native and modeled disulfide bonds in proteins: knowledge-based approaches toward structure prediction of disulfide-rich polypeptides.
    Thangudu RR, Vinayagam A, Pugalenthi G, Manonmani A, Offmann B, Sowdhamini R.
    Proteins; 2005 Mar 01; 58(4):866-79. PubMed ID: 15645448
    [Abstract] [Full Text] [Related]

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