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Journal Abstract Search

169 related items for PubMed ID: 16844970

  • 21. CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes.
    Uchiyama I, Higuchi T, Kobayashi I.
    BMC Bioinformatics; 2006 Oct 24; 7():472. PubMed ID: 17062155
    [Abstract] [Full Text] [Related]

  • 22. SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins.
    Kalinina OV, Novichkov PS, Mironov AA, Gelfand MS, Rakhmaninova AB.
    Nucleic Acids Res; 2004 Jul 01; 32(Web Server issue):W424-8. PubMed ID: 15215423
    [Abstract] [Full Text] [Related]

  • 23. DOUTfinder--identification of distant domain outliers using subsignificant sequence similarity.
    Novatchkova M, Schneider G, Fritz R, Eisenhaber F, Schleiffer A.
    Nucleic Acids Res; 2006 Jul 01; 34(Web Server issue):W214-8. PubMed ID: 16844996
    [Abstract] [Full Text] [Related]

  • 24. ELISA: a unified, multidimensional view of the protein domain universe.
    Shakhnovich BE, Harvey JM, Delisi C.
    Genome Inform; 2004 Jul 01; 15(1):213-20. PubMed ID: 15712123
    [Abstract] [Full Text] [Related]

  • 25. Inferring function from homology.
    Emes RD.
    Methods Mol Biol; 2008 Jul 01; 453():149-68. PubMed ID: 18712301
    [Abstract] [Full Text] [Related]

  • 26. PhyloDome--visualization of taxonomic distributions of domains occurring in eukaryote protein sequence sets.
    Novatchkova M, Wildpaner M, Schweizer D, Eisenhaber F.
    Nucleic Acids Res; 2005 Jul 01; 33(Web Server issue):W121-5. PubMed ID: 15980439
    [Abstract] [Full Text] [Related]

  • 27. PSI-BLAST-ISS: an intermediate sequence search tool for estimation of the position-specific alignment reliability.
    Margelevicius M, Venclovas C.
    BMC Bioinformatics; 2005 Jul 21; 6():185. PubMed ID: 16033659
    [Abstract] [Full Text] [Related]

  • 28. WAViS server for handling, visualization and presentation of multiple alignments of nucleotide or amino acids sequences.
    Zika R, Paces J, Pavlícek A, Paces V.
    Nucleic Acids Res; 2004 Jul 01; 32(Web Server issue):W48-9. PubMed ID: 15215348
    [Abstract] [Full Text] [Related]

  • 29. PhyloPat: phylogenetic pattern analysis of eukaryotic genes.
    Hulsen T, de Vlieg J, Groenen PM.
    BMC Bioinformatics; 2006 Sep 01; 7():398. PubMed ID: 16948844
    [Abstract] [Full Text] [Related]

  • 30. PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments.
    Suyama M, Torrents D, Bork P.
    Nucleic Acids Res; 2006 Jul 01; 34(Web Server issue):W609-12. PubMed ID: 16845082
    [Abstract] [Full Text] [Related]

  • 31. indel-Seq-Gen: a new protein family simulator incorporating domains, motifs, and indels.
    Strope CL, Scott SD, Moriyama EN.
    Mol Biol Evol; 2007 Mar 01; 24(3):640-9. PubMed ID: 17158778
    [Abstract] [Full Text] [Related]

  • 32. A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm.
    Podell S, Gaasterland T, Allen EE.
    BMC Bioinformatics; 2008 Oct 07; 9():419. PubMed ID: 18840280
    [Abstract] [Full Text] [Related]

  • 33. ProSAT2--Protein Structure Annotation Server.
    Gabdoulline RR, Ulbrich S, Richter S, Wade RC.
    Nucleic Acids Res; 2006 Jul 01; 34(Web Server issue):W79-83. PubMed ID: 16845114
    [Abstract] [Full Text] [Related]

  • 34. VISSA: a program to visualize structural features from structure sequence alignment.
    Li W, Godzik A.
    Bioinformatics; 2006 Apr 01; 22(7):887-8. PubMed ID: 16434438
    [Abstract] [Full Text] [Related]

  • 35. [Computational method for prediction of protein functional sites using specificity determinants].
    Kalinina OV, Rassel RB, Rakhmaninova AB, Gel'fand MS.
    Mol Biol (Mosk); 2007 Apr 01; 41(1):151-62. PubMed ID: 17380902
    [Abstract] [Full Text] [Related]

  • 36. PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways.
    Mi H, Guo N, Kejariwal A, Thomas PD.
    Nucleic Acids Res; 2007 Jan 01; 35(Database issue):D247-52. PubMed ID: 17130144
    [Abstract] [Full Text] [Related]

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  • 39. Prediction of protein interaction based on similarity of phylogenetic trees.
    Pazos F, Juan D, Izarzugaza JM, Leon E, Valencia A.
    Methods Mol Biol; 2008 Jan 01; 484():523-35. PubMed ID: 18592199
    [Abstract] [Full Text] [Related]

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