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Journal Abstract Search

245 related items for PubMed ID: 16844989

  • 1. transFold: a web server for predicting the structure and residue contacts of transmembrane beta-barrels.
    Waldispühl J, Berger B, Clote P, Steyaert JM.
    Nucleic Acids Res; 2006 Jul 01; 34(Web Server issue):W189-93. PubMed ID: 16844989
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  • 2. Predicting transmembrane beta-barrels and interstrand residue interactions from sequence.
    Waldispühl J, Berger B, Clote P, Steyaert JM.
    Proteins; 2006 Oct 01; 65(1):61-74. PubMed ID: 16858668
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  • 6. TMBETA-NET: discrimination and prediction of membrane spanning beta-strands in outer membrane proteins.
    Gromiha MM, Ahmad S, Suwa M.
    Nucleic Acids Res; 2005 Jul 01; 33(Web Server issue):W164-7. PubMed ID: 15980447
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  • 9. TMB-Hunt: a web server to screen sequence sets for transmembrane beta-barrel proteins.
    Garrow AG, Agnew A, Westhead DR.
    Nucleic Acids Res; 2005 Jul 01; 33(Web Server issue):W188-92. PubMed ID: 15980452
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  • 10. Prediction of membrane spanning segments and topology in beta-barrel membrane proteins at better accuracy.
    Ou YY, Chen SA, Gromiha MM.
    J Comput Chem; 2010 Jan 15; 31(1):217-23. PubMed ID: 19421989
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  • 11. A Hidden Markov Model method, capable of predicting and discriminating beta-barrel outer membrane proteins.
    Bagos PG, Liakopoulos TD, Spyropoulos IC, Hamodrakas SJ.
    BMC Bioinformatics; 2004 Mar 15; 5():29. PubMed ID: 15070403
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  • 12. TMB-Hunt: an amino acid composition based method to screen proteomes for beta-barrel transmembrane proteins.
    Garrow AG, Agnew A, Westhead DR.
    BMC Bioinformatics; 2005 Mar 15; 6():56. PubMed ID: 15769290
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  • 14. A consensus algorithm to screen genomes for novel families of transmembrane beta barrel proteins.
    Garrow AG, Westhead DR.
    Proteins; 2007 Oct 01; 69(1):8-18. PubMed ID: 17557332
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  • 15. Interstrand pairing patterns in beta-barrel membrane proteins: the positive-outside rule, aromatic rescue, and strand registration prediction.
    Jackups R, Liang J.
    J Mol Biol; 2005 Dec 09; 354(4):979-93. PubMed ID: 16277990
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  • 18. PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins.
    Bigelow H, Rost B.
    Nucleic Acids Res; 2006 Jul 01; 34(Web Server issue):W186-8. PubMed ID: 16844988
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  • 19. ZPRED: predicting the distance to the membrane center for residues in alpha-helical membrane proteins.
    Granseth E, Viklund H, Elofsson A.
    Bioinformatics; 2006 Jul 15; 22(14):e191-6. PubMed ID: 16873471
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  • 20. Statistical analysis and exposure status classification of transmembrane beta barrel residues.
    Hayat S, Park Y, Helms V.
    Comput Biol Chem; 2011 Apr 15; 35(2):96-107. PubMed ID: 21531175
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