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Journal Abstract Search

347 related items for PubMed ID: 16845049

  • 1. EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments.
    Masoudi-Nejad A, Tonomura K, Kawashima S, Moriya Y, Suzuki M, Itoh M, Kanehisa M, Endo T, Goto S.
    Nucleic Acids Res; 2006 Jul 01; 34(Web Server issue):W459-62. PubMed ID: 16845049
    [Abstract] [Full Text] [Related]

  • 2. e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences.
    Krüger J, Sczyrba A, Kurtz S, Giegerich R.
    Nucleic Acids Res; 2004 Jul 01; 32(Web Server issue):W301-4. PubMed ID: 15215398
    [Abstract] [Full Text] [Related]

  • 3. ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform.
    Nagaraj SH, Deshpande N, Gasser RB, Ranganathan S.
    Nucleic Acids Res; 2007 Jul 01; 35(Web Server issue):W143-7. PubMed ID: 17545197
    [Abstract] [Full Text] [Related]

  • 4. The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes.
    Lee Y, Tsai J, Sunkara S, Karamycheva S, Pertea G, Sultana R, Antonescu V, Chan A, Cheung F, Quackenbush J.
    Nucleic Acids Res; 2005 Jan 01; 33(Database issue):D71-4. PubMed ID: 15608288
    [Abstract] [Full Text] [Related]

  • 5. A hitchhiker's guide to expressed sequence tag (EST) analysis.
    Nagaraj SH, Gasser RB, Ranganathan S.
    Brief Bioinform; 2007 Jan 01; 8(1):6-21. PubMed ID: 16772268
    [Abstract] [Full Text] [Related]

  • 6. JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.
    Latorre M, Silva H, Saba J, Guziolowski C, Vizoso P, Martinez V, Maldonado J, Morales A, Caroca R, Cambiazo V, Campos-Vargas R, Gonzalez M, Orellana A, Retamales J, Meisel LA.
    BMC Bioinformatics; 2006 Nov 23; 7():513. PubMed ID: 17123449
    [Abstract] [Full Text] [Related]

  • 7. WebTraceMiner: a web service for processing and mining EST sequence trace files.
    Liang C, Wang G, Liu L, Ji G, Liu Y, Chen J, Webb JS, Reese G, Dean JF.
    Nucleic Acids Res; 2007 Jul 23; 35(Web Server issue):W137-42. PubMed ID: 17488839
    [Abstract] [Full Text] [Related]

  • 8. ConiferEST: an integrated bioinformatics system for data reprocessing and mining of conifer expressed sequence tags (ESTs).
    Liang C, Wang G, Liu L, Ji G, Fang L, Liu Y, Carter K, Webb JS, Dean JF.
    BMC Genomics; 2007 May 29; 8():134. PubMed ID: 17535431
    [Abstract] [Full Text] [Related]

  • 9. SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.
    Panitz F, Stengaard H, Hornshøj H, Gorodkin J, Hedegaard J, Cirera S, Thomsen B, Madsen LB, Høj A, Vingborg RK, Zahn B, Wang X, Wang X, Wernersson R, Jørgensen CB, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Brunak S, Fredholm M, Bendixen C.
    Bioinformatics; 2007 Jul 01; 23(13):i387-91. PubMed ID: 17646321
    [Abstract] [Full Text] [Related]

  • 10. PESTAS: a web server for EST analysis and sequence mining.
    Nam SH, Kim DW, Jung TS, Choi YS, Kim DW, Choi HS, Choi SH, Park HS.
    Bioinformatics; 2009 Jul 15; 25(14):1846-8. PubMed ID: 19414531
    [Abstract] [Full Text] [Related]

  • 11. EST processing: from trace to sequence.
    Schmid R, Blaxter M.
    Methods Mol Biol; 2009 Jul 15; 533():189-220. PubMed ID: 19277557
    [Abstract] [Full Text] [Related]

  • 12. Construction and characterization of a rock-cluster-based EST analysis pipeline.
    Zhu T, Zhou J, An Y, Zhou J, Li H, Xu G, Ma D.
    Comput Biol Chem; 2006 Feb 15; 30(1):81-6. PubMed ID: 16321574
    [Abstract] [Full Text] [Related]

  • 13. ESTviewer: a web interface for visualizing mouse, rat, cattle, pig and chicken conserved ESTs in human genes and human alternatively spliced variants.
    Chen FC, Chuang TJ.
    Bioinformatics; 2005 May 15; 21(10):2510-3. PubMed ID: 15722373
    [Abstract] [Full Text] [Related]

  • 14. GeMprospector--online design of cross-species genetic marker candidates in legumes and grasses.
    Fredslund J, Madsen LH, Hougaard BK, Sandal N, Stougaard J, Bertioli D, Schauser L.
    Nucleic Acids Res; 2006 Jul 01; 34(Web Server issue):W670-5. PubMed ID: 16845095
    [Abstract] [Full Text] [Related]

  • 15. Penaeus monodon gene discovery project: the generation of an EST collection and establishment of a database.
    Tassanakajon A, Klinbunga S, Paunglarp N, Rimphanitchayakit V, Udomkit A, Jitrapakdee S, Sritunyalucksana K, Phongdara A, Pongsomboon S, Supungul P, Tang S, Kuphanumart K, Pichyangkura R, Lursinsap C.
    Gene; 2006 Dec 15; 384():104-12. PubMed ID: 16945489
    [Abstract] [Full Text] [Related]

  • 16. PGA4genomics for comparative genome assembly based on genetic algorithm optimization.
    Zhao F, Hou H, Bao Q, Wu J.
    Genomics; 2009 Oct 15; 94(4):284-6. PubMed ID: 19573591
    [Abstract] [Full Text] [Related]

  • 17. GeneTools--application for functional annotation and statistical hypothesis testing.
    Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.
    BMC Bioinformatics; 2006 Oct 24; 7():470. PubMed ID: 17062145
    [Abstract] [Full Text] [Related]

  • 18. GBA server: EST-based digital gene expression profiling.
    Wu X, Walker MG, Luo J, Wei L.
    Nucleic Acids Res; 2005 Jul 01; 33(Web Server issue):W673-6. PubMed ID: 15980560
    [Abstract] [Full Text] [Related]

  • 19. galaxieEST: addressing EST identity through automated phylogenetic analysis.
    Nilsson RH, Rajashekar B, Larsson KH, Ursing BM.
    BMC Bioinformatics; 2004 Jul 05; 5():87. PubMed ID: 15236648
    [Abstract] [Full Text] [Related]

  • 20. Expressed sequence tags: analysis and annotation.
    Parkinson J, Blaxter M.
    Methods Mol Biol; 2004 Jul 05; 270():93-126. PubMed ID: 15153624
    [Abstract] [Full Text] [Related]

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