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997 related items for PubMed ID: 16884212

  • 1. Mixed atomistic and coarse-grained molecular dynamics: simulation of a membrane-bound ion channel.
    Shi Q, Izvekov S, Voth GA.
    J Phys Chem B; 2006 Aug 10; 110(31):15045-8. PubMed ID: 16884212
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  • 3. A multiscale coarse-graining method for biomolecular systems.
    Izvekov S, Voth GA.
    J Phys Chem B; 2005 Feb 24; 109(7):2469-73. PubMed ID: 16851243
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  • 4. Modeling real dynamics in the coarse-grained representation of condensed phase systems.
    Izvekov S, Voth GA.
    J Chem Phys; 2006 Oct 21; 125(15):151101. PubMed ID: 17059230
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  • 7. The multiscale coarse-graining method. III. A test of pairwise additivity of the coarse-grained potential and of new basis functions for the variational calculation.
    Das A, Andersen HC.
    J Chem Phys; 2009 Jul 21; 131(3):034102. PubMed ID: 19624176
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  • 8. Systematic coarse-graining of nanoparticle interactions in molecular dynamics simulation.
    Izvekov S, Violi A, Voth GA.
    J Phys Chem B; 2005 Sep 15; 109(36):17019-24. PubMed ID: 16853168
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  • 11. Peptide folding using multiscale coarse-grained models.
    Thorpe IF, Zhou J, Voth GA.
    J Phys Chem B; 2008 Oct 16; 112(41):13079-90. PubMed ID: 18808094
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  • 12. Mixing MARTINI: electrostatic coupling in hybrid atomistic-coarse-grained biomolecular simulations.
    Wassenaar TA, Ingólfsson HI, Priess M, Marrink SJ, Schäfer LV.
    J Phys Chem B; 2013 Apr 04; 117(13):3516-30. PubMed ID: 23406326
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  • 13. Effective force coarse-graining.
    Wang Y, Noid WG, Liu P, Voth GA.
    Phys Chem Chem Phys; 2009 Mar 28; 11(12):2002-15. PubMed ID: 19280011
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  • 14. A Bayesian statistics approach to multiscale coarse graining.
    Liu P, Shi Q, Daumé H, Voth GA.
    J Chem Phys; 2008 Dec 07; 129(21):214114. PubMed ID: 19063551
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  • 15. Multiscale coarse-graining of ionic liquids.
    Wang Y, Izvekov S, Yan T, Voth GA.
    J Phys Chem B; 2006 Mar 02; 110(8):3564-75. PubMed ID: 16494412
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  • 16. Self-assembling dipeptides: conformational sampling in solvent-free coarse-grained simulation.
    Villa A, Peter C, van der Vegt NF.
    Phys Chem Chem Phys; 2009 Mar 28; 11(12):2077-86. PubMed ID: 19280018
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  • 17. Multiscale Coarse-Graining of Mixed Phospholipid/Cholesterol Bilayers.
    Izvekov S, Voth GA.
    J Chem Theory Comput; 2006 May 28; 2(3):637-48. PubMed ID: 26626671
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  • 18. Molecular dynamics simulations of PAMAM dendrimer-induced pore formation in DPPC bilayers with a coarse-grained model.
    Lee H, Larson RG.
    J Phys Chem B; 2006 Sep 21; 110(37):18204-11. PubMed ID: 16970437
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  • 19. Dynamics of water in the hydration shells of C60: molecular dynamics simulation using a coarse-grained model.
    Choudhury N.
    J Phys Chem B; 2007 Sep 06; 111(35):10474-80. PubMed ID: 17696526
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  • 20. Atomistic simulation of hydrophobic matching effects on lipid composition near a helical peptide embedded in mixed-lipid bilayers.
    Yin F, Kindt JT.
    J Phys Chem B; 2010 Jun 24; 114(24):8076-80. PubMed ID: 20509701
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