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Journal Abstract Search

304 related items for PubMed ID: 16899655

  • 1. Graemlin: general and robust alignment of multiple large interaction networks.
    Flannick J, Novak A, Srinivasan BS, McAdams HH, Batzoglou S.
    Genome Res; 2006 Sep; 16(9):1169-81. PubMed ID: 16899655
    [Abstract] [Full Text] [Related]

  • 2. LocalAli: an evolutionary-based local alignment approach to identify functionally conserved modules in multiple networks.
    Hu J, Reinert K.
    Bioinformatics; 2015 Feb 01; 31(3):363-72. PubMed ID: 25282642
    [Abstract] [Full Text] [Related]

  • 3. LePrimAlign: local entropy-based alignment of PPI networks to predict conserved modules.
    Maskey S, Cho YR.
    BMC Genomics; 2019 Dec 24; 20(Suppl 9):964. PubMed ID: 31874635
    [Abstract] [Full Text] [Related]

  • 4. Global alignment of protein-protein interaction networks.
    Mongiovì M, Sharan R.
    Methods Mol Biol; 2013 Dec 24; 939():21-34. PubMed ID: 23192538
    [Abstract] [Full Text] [Related]

  • 5. Pairwise alignment of interaction networks by fast identification of maximal conserved patterns.
    Tian W, Samatova NF.
    Pac Symp Biocomput; 2009 Dec 24; ():99-110. PubMed ID: 19209698
    [Abstract] [Full Text] [Related]

  • 6. GraphAlignment: Bayesian pairwise alignment of biological networks.
    Kolář M, Meier J, Mustonen V, Lässig M, Berg J.
    BMC Syst Biol; 2012 Nov 21; 6():144. PubMed ID: 23171476
    [Abstract] [Full Text] [Related]

  • 7. Automatic parameter learning for multiple local network alignment.
    Flannick J, Novak A, Do CB, Srinivasan BS, Batzoglou S.
    J Comput Biol; 2009 Aug 21; 16(8):1001-22. PubMed ID: 19645599
    [Abstract] [Full Text] [Related]

  • 8. NetCoffee: a fast and accurate global alignment approach to identify functionally conserved proteins in multiple networks.
    Hu J, Kehr B, Reinert K.
    Bioinformatics; 2014 Feb 15; 30(4):540-8. PubMed ID: 24336806
    [Abstract] [Full Text] [Related]

  • 9. SiPAN: simultaneous prediction and alignment of protein-protein interaction networks.
    Alkan F, Erten C.
    Bioinformatics; 2015 Jul 15; 31(14):2356-63. PubMed ID: 25788620
    [Abstract] [Full Text] [Related]

  • 10. INDEX: Incremental depth extension approach for protein-protein interaction networks alignment.
    Mir A, Naghibzadeh M, Saadati N.
    Biosystems; 2017 Dec 15; 162():24-34. PubMed ID: 28860070
    [Abstract] [Full Text] [Related]

  • 11. Accurate multiple network alignment through context-sensitive random walk.
    Jeong H, Yoon BJ.
    BMC Syst Biol; 2015 Dec 15; 9 Suppl 1(Suppl 1):S7. PubMed ID: 25707987
    [Abstract] [Full Text] [Related]

  • 12. Identification of functional modules from conserved ancestral protein-protein interactions.
    Dutkowski J, Tiuryn J.
    Bioinformatics; 2007 Jul 01; 23(13):i149-58. PubMed ID: 17646291
    [Abstract] [Full Text] [Related]

  • 13. Domain-oriented edge-based alignment of protein interaction networks.
    Guo X, Hartemink AJ.
    Bioinformatics; 2009 Jun 15; 25(12):i240-6. PubMed ID: 19477994
    [Abstract] [Full Text] [Related]

  • 14. Joint Alignment of Multiple Protein-Protein Interaction Networks via Convex Optimization.
    Hashemifar S, Huang Q, Xu J.
    J Comput Biol; 2016 Nov 15; 23(11):903-911. PubMed ID: 27428933
    [Abstract] [Full Text] [Related]

  • 15. Fuse: multiple network alignment via data fusion.
    Gligorijević V, Malod-Dognin N, Pržulj N.
    Bioinformatics; 2016 Apr 15; 32(8):1195-203. PubMed ID: 26668003
    [Abstract] [Full Text] [Related]

  • 16. Node fingerprinting: an efficient heuristic for aligning biological networks.
    Radu A, Charleston M.
    J Comput Biol; 2014 Oct 15; 21(10):760-70. PubMed ID: 25148127
    [Abstract] [Full Text] [Related]

  • 17. Node Handprinting: A Scalable and Accurate Algorithm for Aligning Multiple Biological Networks.
    Radu A, Charleston M.
    J Comput Biol; 2015 Jul 15; 22(7):687-97. PubMed ID: 25695597
    [Abstract] [Full Text] [Related]

  • 18. Global Biological Network Alignment by Using Efficient Memetic Algorithm.
    Maoguo Gong, Zhenglin Peng, Lijia Ma, Jiaxiang Huang.
    IEEE/ACM Trans Comput Biol Bioinform; 2016 Nov 15; 13(6):1117-1129. PubMed ID: 28055895
    [Abstract] [Full Text] [Related]

  • 19. A Novel Computational Approach for Global Alignment for Multiple Biological Networks.
    Djeddi WE, Yahia SB, Nguifo EM.
    IEEE/ACM Trans Comput Biol Bioinform; 2018 Nov 15; 15(6):2060-2066. PubMed ID: 29994444
    [Abstract] [Full Text] [Related]

  • 20. NAPAbench 2: A network synthesis algorithm for generating realistic protein-protein interaction (PPI) network families.
    Woo HM, Jeong H, Yoon BJ.
    PLoS One; 2020 Nov 15; 15(1):e0227598. PubMed ID: 31986158
    [Abstract] [Full Text] [Related]

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