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Journal Abstract Search

456 related items for PubMed ID: 16913813

  • 21. Folding simulations of small proteins.
    Kim SY, Lee J, Lee J.
    Biophys Chem; 2005 Apr 01; 115(2-3):195-200. PubMed ID: 15752604
    [Abstract] [Full Text] [Related]

  • 22. Mixed Monte Carlo/Molecular Dynamics simulations of the prion protein.
    Ribeiro AA, de Alencastro RB.
    J Mol Graph Model; 2013 May 01; 42():1-6. PubMed ID: 23501158
    [Abstract] [Full Text] [Related]

  • 23. Balancing simulation accuracy and efficiency with the Amber united atom force field.
    Hsieh MJ, Luo R.
    J Phys Chem B; 2010 Mar 04; 114(8):2886-93. PubMed ID: 20131885
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  • 24. Application of the accelerated molecular dynamics simulations to the folding of a small protein.
    Yang L, Grubb MP, Gao YQ.
    J Chem Phys; 2007 Mar 28; 126(12):125102. PubMed ID: 17411164
    [Abstract] [Full Text] [Related]

  • 25. Convergence of replica exchange molecular dynamics.
    Zhang W, Wu C, Duan Y.
    J Chem Phys; 2005 Oct 15; 123(15):154105. PubMed ID: 16252940
    [Abstract] [Full Text] [Related]

  • 26. Multiple "time step" Monte Carlo simulations: application to charged systems with Ewald summation.
    Bernacki K, Hetenyi B, Berne BJ.
    J Chem Phys; 2004 Jul 01; 121(1):44-50. PubMed ID: 15260521
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  • 29. Monte Carlo simulation of protein folding in the presence of residue-specific binding sites.
    Rossinsky E, Srebnik S.
    Biopolymers; 2005 Dec 05; 79(5):259-68. PubMed ID: 16134169
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  • 31. Folding mechanism of beta-hairpins studied by replica exchange molecular simulations.
    Zhang J, Qin M, Wang W.
    Proteins; 2006 Mar 15; 62(3):672-85. PubMed ID: 16362933
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  • 32. Significance of conformational biases in Monte Carlo simulations of protein folding: lessons from Metropolis-Hastings approach.
    Przytycka T.
    Proteins; 2004 Nov 01; 57(2):338-44. PubMed ID: 15340921
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  • 34. A knowledge-based move set for protein folding.
    Chen WW, Yang JS, Shakhnovich EI.
    Proteins; 2007 Feb 15; 66(3):682-8. PubMed ID: 17143895
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  • 35. Phi-value analysis by molecular dynamics simulations of reversible folding.
    Settanni G, Rao F, Caflisch A.
    Proc Natl Acad Sci U S A; 2005 Jan 18; 102(3):628-33. PubMed ID: 15644439
    [Abstract] [Full Text] [Related]

  • 36. Overcoming entropic barrier with coupled sampling at dual resolutions.
    Lwin TZ, Luo R.
    J Chem Phys; 2005 Nov 15; 123(19):194904. PubMed ID: 16321110
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  • 37. The influence of different treatments of electrostatic interactions on the thermodynamics of folding of peptides.
    Baumketner A, Shea JE.
    J Phys Chem B; 2005 Nov 17; 109(45):21322-8. PubMed ID: 16853765
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  • 40. Simulating proteins at constant pH: An approach combining molecular dynamics and Monte Carlo simulation.
    Bürgi R, Kollman PA, Van Gunsteren WF.
    Proteins; 2002 Jun 01; 47(4):469-80. PubMed ID: 12001225
    [Abstract] [Full Text] [Related]

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