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Pubmed for Handhelds

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Journal Abstract Search

598 related items for PubMed ID: 16926221

  • 1. SBML-PET: a Systems Biology Markup Language-based parameter estimation tool.
    Zi Z, Klipp E.
    Bioinformatics; 2006 Nov 01; 22(21):2704-5. PubMed ID: 16926221
    [Abstract] [Full Text] [Related]

  • 2. SBMLToolbox: an SBML toolbox for MATLAB users.
    Keating SM, Bornstein BJ, Finney A, Hucka M.
    Bioinformatics; 2006 May 15; 22(10):1275-7. PubMed ID: 16574696
    [Abstract] [Full Text] [Related]

  • 3. SBML-PET-MPI: a parallel parameter estimation tool for Systems Biology Markup Language based models.
    Zi Z.
    Bioinformatics; 2011 Apr 01; 27(7):1028-9. PubMed ID: 21303862
    [Abstract] [Full Text] [Related]

  • 4. A model diagram layout extension for SBML.
    Gauges R, Rost U, Sahle S, Wegner K.
    Bioinformatics; 2006 Aug 01; 22(15):1879-85. PubMed ID: 16709586
    [Abstract] [Full Text] [Related]

  • 5. Supporting SBML as a model exchange format in software applications.
    Keating SM, Le Novère N.
    Methods Mol Biol; 2013 Aug 01; 1021():201-25. PubMed ID: 23715987
    [Abstract] [Full Text] [Related]

  • 6. SBML export interface for the systems biology toolbox for MATLAB.
    Schmidt H, Drews G, Vera J, Wolkenhauer O.
    Bioinformatics; 2007 May 15; 23(10):1297-8. PubMed ID: 17384017
    [Abstract] [Full Text] [Related]

  • 7. MathSBML: a package for manipulating SBML-based biological models.
    Shapiro BE, Hucka M, Finney A, Doyle J.
    Bioinformatics; 2004 Nov 01; 20(16):2829-31. PubMed ID: 15087311
    [Abstract] [Full Text] [Related]

  • 8. SEBINI: Software Environment for BIological Network Inference.
    Taylor RC, Shah A, Treatman C, Blevins M.
    Bioinformatics; 2006 Nov 01; 22(21):2706-8. PubMed ID: 16954144
    [Abstract] [Full Text] [Related]

  • 9. Supporting the SBML layout extension.
    Deckard A, Bergmann FT, Sauro HM.
    Bioinformatics; 2006 Dec 01; 22(23):2966-7. PubMed ID: 17038346
    [Abstract] [Full Text] [Related]

  • 10. The SBML ODE Solver Library: a native API for symbolic and fast numerical analysis of reaction networks.
    Machné R, Finney A, Müller S, Lu J, Widder S, Flamm C.
    Bioinformatics; 2006 Jun 01; 22(11):1406-7. PubMed ID: 16527832
    [Abstract] [Full Text] [Related]

  • 11. LibSBML: an API library for SBML.
    Bornstein BJ, Keating SM, Jouraku A, Hucka M.
    Bioinformatics; 2008 Mar 15; 24(6):880-1. PubMed ID: 18252737
    [Abstract] [Full Text] [Related]

  • 12. The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.
    Hucka M, Bergmann FT, Dräger A, Hoops S, Keating SM, Le Novère N, Myers CJ, Olivier BG, Sahle S, Schaff JC, Smith LP, Waltemath D, Wilkinson DJ.
    J Integr Bioinform; 2018 Mar 09; 15(1):. PubMed ID: 29522418
    [Abstract] [Full Text] [Related]

  • 13. Systems Biology Toolbox for MATLAB: a computational platform for research in systems biology.
    Schmidt H, Jirstrand M.
    Bioinformatics; 2006 Feb 15; 22(4):514-5. PubMed ID: 16317076
    [Abstract] [Full Text] [Related]

  • 14. Design and implementation of a tool for translating SBML into the biochemical stochastic pi-calculus.
    Eccher C, Priami C.
    Bioinformatics; 2006 Dec 15; 22(24):3075-81. PubMed ID: 17046974
    [Abstract] [Full Text] [Related]

  • 15. JSBML: a flexible Java library for working with SBML.
    Dräger A, Rodriguez N, Dumousseau M, Dörr A, Wrzodek C, Le Novère N, Zell A, Hucka M.
    Bioinformatics; 2011 Aug 01; 27(15):2167-8. PubMed ID: 21697129
    [Abstract] [Full Text] [Related]

  • 16. CSML2SBML: a novel tool for converting quantitative biological pathway models from CSML into SBML.
    Li C, Nagasaki M, Ikeda E, Sekiya Y, Miyano S.
    Biosystems; 2014 Jul 01; 121():22-8. PubMed ID: 24881961
    [Abstract] [Full Text] [Related]

  • 17. Automated manipulation of systems biology models using libSBML within Taverna workflows.
    Li P, Oinn T, Soiland S, Kell DB.
    Bioinformatics; 2008 Jan 15; 24(2):287-9. PubMed ID: 18056069
    [Abstract] [Full Text] [Related]

  • 18. The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.
    Hucka M, Bergmann FT, Chaouiya C, Dräger A, Hoops S, Keating SM, König M, Novère NL, Myers CJ, Olivier BG, Sahle S, Schaff JC, Sheriff R, Smith LP, Waltemath D, Wilkinson DJ, Zhang F.
    J Integr Bioinform; 2019 Jun 20; 16(2):. PubMed ID: 31219795
    [Abstract] [Full Text] [Related]

  • 19. The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core.
    Hucka M, Bergmann FT, Hoops S, Keating SM, Sahle S, Schaff JC, Smith LP, Wilkinson DJ.
    J Integr Bioinform; 2015 Sep 04; 12(2):266. PubMed ID: 26528564
    [Abstract] [Full Text] [Related]

  • 20. An application programming interface for CellNetAnalyzer.
    Klamt S, von Kamp A.
    Biosystems; 2011 Aug 04; 105(2):162-8. PubMed ID: 21315797
    [Abstract] [Full Text] [Related]

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