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774 related items for PubMed ID: 16953592

  • 1. Interaction energy contributions of H-bonded and stacked structures of the AT and GC DNA base pairs from the combined density functional theory and intermolecular perturbation theory approach.
    Hesselmann A, Jansen G, Schütz M.
    J Am Chem Soc; 2006 Sep 13; 128(36):11730-1. PubMed ID: 16953592
    [Abstract] [Full Text] [Related]

  • 2. True stabilization energies for the optimal planar hydrogen-bonded and stacked structures of guanine...cytosine, adenine...thymine, and their 9- and 1-methyl derivatives: complete basis set calculations at the MP2 and CCSD(T) levels and comparison with experiment.
    Jurecka P, Hobza P.
    J Am Chem Soc; 2003 Dec 17; 125(50):15608-13. PubMed ID: 14664608
    [Abstract] [Full Text] [Related]

  • 3. Structural variability and the nature of intermolecular interactions in Watson-Crick B-DNA base pairs.
    Czyznikowska Z, Góra RW, Zaleśny R, Lipkowski P, Jarzembska KN, Dominiak PM, Leszczynski J.
    J Phys Chem B; 2010 Jul 29; 114(29):9629-44. PubMed ID: 20604521
    [Abstract] [Full Text] [Related]

  • 4. Stabilization energies of the hydrogen-bonded and stacked structures of nucleic acid base pairs in the crystal geometries of CG, AT, and AC DNA steps and in the NMR geometry of the 5'-d(GCGAAGC)-3' hairpin: Complete basis set calculations at the MP2 and CCSD(T) levels.
    Dabkowska I, Gonzalez HV, Jurecka P, Hobza P.
    J Phys Chem A; 2005 Feb 17; 109(6):1131-6. PubMed ID: 16833422
    [Abstract] [Full Text] [Related]

  • 5. Microhydration of guanine...cytosine base pairs, a theoretical Study on the role of water in stability, structure and tautomeric equilibrium.
    Zelený T, Hobza P, Kabelác M.
    Phys Chem Chem Phys; 2009 May 14; 11(18):3430-5. PubMed ID: 19421545
    [Abstract] [Full Text] [Related]

  • 6. Density functional theory-symmetry adapted perturbation treatment energy decomposition of nucleic acid base pairs taken from DNA crystal geometry.
    Sedlák R, Jurecka P, Hobza P.
    J Chem Phys; 2007 Aug 21; 127(7):075104. PubMed ID: 17718635
    [No Abstract] [Full Text] [Related]

  • 7. On geometries of stacked and H-bonded nucleic acid base pairs determined at various DFT, MP2, and CCSD(T) levels up to the CCSD(T)/complete basis set limit level.
    Dabkowska I, Jurecka P, Hobza P.
    J Chem Phys; 2005 May 22; 122(20):204322. PubMed ID: 15945739
    [Abstract] [Full Text] [Related]

  • 8. Nanoswitches based on DNA base pairs: why adenine-thymine is less suitable than guanine-cytosine.
    Fonseca Guerra C, van der Wijst T, Bickelhaupt FM.
    Chemphyschem; 2006 Sep 11; 7(9):1971-9. PubMed ID: 16888742
    [Abstract] [Full Text] [Related]

  • 9. Metahybrid density functional theory and correlated ab initio studies on microhydrated adenine-thymine base pairs.
    Dkhissi A, Blossey R.
    J Phys Chem B; 2008 Jul 31; 112(30):9182-6. PubMed ID: 18597520
    [Abstract] [Full Text] [Related]

  • 10. Ab initio base-pairing energies of an oxidized thymine product, 5-formyluracil, with standard DNA bases at the BSSE-free DFT and MP2 theory levels.
    Volk DE, Thiviyanathan V, Somasunderam A, Gorenstein DG.
    Org Biomol Chem; 2007 May 21; 5(10):1554-8. PubMed ID: 17571183
    [Abstract] [Full Text] [Related]

  • 11. Direct assessment of interresidue forces in Watson-Crick base pairs using theoretical compliance constants.
    Grunenberg J.
    J Am Chem Soc; 2004 Dec 22; 126(50):16310-1. PubMed ID: 15600318
    [Abstract] [Full Text] [Related]

  • 12. Double-proton transfer in adenine-thymine and guanine-cytosine base pairs. A post-Hartree-Fock ab initio study.
    Gorb L, Podolyan Y, Dziekonski P, Sokalski WA, Leszczynski J.
    J Am Chem Soc; 2004 Aug 18; 126(32):10119-29. PubMed ID: 15303888
    [Abstract] [Full Text] [Related]

  • 13. Toward the exact solution of the electronic Schrödinger equation for noncovalent molecular interactions: worldwide distributed quantum monte carlo calculations.
    Korth M, Lüchow A, Grimme S.
    J Phys Chem A; 2008 Mar 13; 112(10):2104-9. PubMed ID: 18201073
    [Abstract] [Full Text] [Related]

  • 14. Energy barriers between H-bonded and stacked structures of 9-methyladenine...1-methylthymine and 9-methylguanine...1-methylcytosine complexes.
    Cerný J, Hobza P.
    Chem Commun (Camb); 2010 Jan 21; 46(3):383-5. PubMed ID: 20066299
    [Abstract] [Full Text] [Related]

  • 15. Hydrogen-bonding-induced shifts of the excitation energies in nucleic acid bases: an interplay between electrostatic and electron density overlap effects.
    Wesolowski TA.
    J Am Chem Soc; 2004 Sep 22; 126(37):11444-5. PubMed ID: 15366883
    [Abstract] [Full Text] [Related]

  • 16. Nature of bonding in nine planar hydrogen-bonded adenine...thymine base pairs.
    Ran J, Hobza P.
    J Phys Chem B; 2009 Mar 05; 113(9):2933-6. PubMed ID: 19708119
    [Abstract] [Full Text] [Related]

  • 17. Binding of gold clusters with DNA base pairs: a density functional study of neutral and anionic GC-Aun and AT-Aun (n = 4, 8) complexes.
    Kumar A, Mishra PC, Suhai S.
    J Phys Chem A; 2006 Jun 22; 110(24):7719-27. PubMed ID: 16774220
    [Abstract] [Full Text] [Related]

  • 18. A theoretical study of structures and electron affinities of radical anions of guanine-cytosine, adenine-thymine, and hypoxanthine-cytosine base pairs.
    Kumar A, Knapp-Mohammady M, Mishra PC, Suhai S.
    J Comput Chem; 2004 Jun 22; 25(8):1047-59. PubMed ID: 15067680
    [Abstract] [Full Text] [Related]

  • 19. On the aromatic character of the heterocyclic bases of DNA and RNA.
    Cyrański MK, Gilski M, Jaskólski M, Krygowski TM.
    J Org Chem; 2003 Oct 31; 68(22):8607-13. PubMed ID: 14575493
    [Abstract] [Full Text] [Related]

  • 20. Benchmark studies on the building blocks of DNA. 3. Watson-Crick and stacked base pairs.
    Szalay PG, Watson T, Perera A, Lotrich V, Bartlett RJ.
    J Phys Chem A; 2013 Apr 18; 117(15):3149-57. PubMed ID: 23473108
    [Abstract] [Full Text] [Related]


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