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Journal Abstract Search

416 related items for PubMed ID: 17004828

  • 1. Entropy of water in the hydration layer of major and minor grooves of DNA.
    Jana B, Pal S, Maiti PK, Lin ST, Hynes JT, Bagchi B.
    J Phys Chem B; 2006 Oct 05; 110(39):19611-8. PubMed ID: 17004828
    [Abstract] [Full Text] [Related]

  • 2. Entropy and dynamics of water in hydration layers of a bilayer.
    Debnath A, Mukherjee B, Ayappa KG, Maiti PK, Lin ST.
    J Chem Phys; 2010 Nov 07; 133(17):174704. PubMed ID: 21054062
    [Abstract] [Full Text] [Related]

  • 3. Dynamical transition of water in the grooves of DNA duplex at low temperature.
    Biswal D, Jana B, Pal S, Bagchi B.
    J Phys Chem B; 2009 Apr 02; 113(13):4394-9. PubMed ID: 19267491
    [Abstract] [Full Text] [Related]

  • 4. Exploring DNA groove water dynamics through hydrogen bond lifetime and orientational relaxation.
    Pal S, Maiti PK, Bagchi B.
    J Chem Phys; 2006 Dec 21; 125(23):234903. PubMed ID: 17190573
    [Abstract] [Full Text] [Related]

  • 5. Enhanced tetrahedral ordering of water molecules in minor grooves of DNA: relative role of DNA rigidity, nanoconfinement, and surface specific interactions.
    Jana B, Pal S, Bagchi B.
    J Phys Chem B; 2010 Mar 18; 114(10):3633-8. PubMed ID: 20170102
    [Abstract] [Full Text] [Related]

  • 6. Water molecules in DNA recognition II: a molecular dynamics view of the structure and hydration of the trp operator.
    Bonvin AM, Sunnerhagen M, Otting G, van Gunsteren WF.
    J Mol Biol; 1998 Oct 02; 282(4):859-73. PubMed ID: 9743632
    [Abstract] [Full Text] [Related]

  • 7. A theoretical analysis on hydration thermodynamics of proteins.
    Imai T, Harano Y, Kinoshita M, Kovalenko A, Hirata F.
    J Chem Phys; 2006 Jul 14; 125(2):24911. PubMed ID: 16848615
    [Abstract] [Full Text] [Related]

  • 8. Comparison of charge models for fixed-charge force fields: small-molecule hydration free energies in explicit solvent.
    Mobley DL, Dumont E, Chodera JD, Dill KA.
    J Phys Chem B; 2007 Mar 08; 111(9):2242-54. PubMed ID: 17291029
    [Abstract] [Full Text] [Related]

  • 9. Mechanism of the hydration of carbon dioxide: direct participation of H2O versus microsolvation.
    Nguyen MT, Matus MH, Jackson VE, Vu TN, Rustad JR, Dixon DA.
    J Phys Chem A; 2008 Oct 16; 112(41):10386-98. PubMed ID: 18816037
    [Abstract] [Full Text] [Related]

  • 10. Binding of netropsin to several DNA constructs: evidence for at least two different 1:1 complexes formed from an -AATT-containing ds-DNA construct and a single minor groove binding ligand.
    Freyer MW, Buscaglia R, Cashman D, Hyslop S, Wilson WD, Chaires JB, Lewis EA.
    Biophys Chem; 2007 Mar 16; 126(1-3):186-96. PubMed ID: 16837123
    [Abstract] [Full Text] [Related]

  • 11. Dynamics and thermodynamics of water in PAMAM dendrimers at subnanosecond time scales.
    Lin ST, Maiti PK, Goddard WA.
    J Phys Chem B; 2005 May 12; 109(18):8663-72. PubMed ID: 16852026
    [Abstract] [Full Text] [Related]

  • 12. Determination of the residence time of water molecules hydrating B'- DNA and B-DNA, by one-dimensional zero-enhancement nuclear Overhauser effect spectroscopy.
    Phan AT, Leroy JL, Guéron M.
    J Mol Biol; 1999 Feb 19; 286(2):505-19. PubMed ID: 9973567
    [Abstract] [Full Text] [Related]

  • 13. Energetics of binding the mammalian high mobility group protein HMGA2 to poly(dA-dT)2 and poly(dA)-poly(dT).
    Cui T, Wei S, Brew K, Leng F.
    J Mol Biol; 2005 Sep 23; 352(3):629-45. PubMed ID: 16109425
    [Abstract] [Full Text] [Related]

  • 14. Water regulation of actinomycin-D binding to DNA: the interplay among drug affinity, DNA long-range conformation, and hydration.
    Ruggiero Neto J, Colombo MF.
    Biopolymers; 2000 Jan 23; 53(1):46-59. PubMed ID: 10644950
    [Abstract] [Full Text] [Related]

  • 15. Theoretical analysis on changes in thermodynamic quantities upon protein folding: essential role of hydration.
    Imai T, Harano Y, Kinoshita M, Kovalenko A, Hirata F.
    J Chem Phys; 2007 Jun 14; 126(22):225102. PubMed ID: 17581082
    [Abstract] [Full Text] [Related]

  • 16. Absolute hydration entropies of alkali metal ions from molecular dynamics simulations.
    Carlsson J, Aqvist J.
    J Phys Chem B; 2009 Jul 30; 113(30):10255-60. PubMed ID: 19580304
    [Abstract] [Full Text] [Related]

  • 17. On the molecular mechanism of drug intercalation into DNA: a simulation study of the intercalation pathway, free energy, and DNA structural changes.
    Mukherjee A, Lavery R, Bagchi B, Hynes JT.
    J Am Chem Soc; 2008 Jul 30; 130(30):9747-55. PubMed ID: 18611009
    [Abstract] [Full Text] [Related]

  • 18. A molecular dynamics study of thermodynamic and structural aspects of the hydration of cavities in proteins.
    Wade RC, Mazor MH, McCammon JA, Quiocho FA.
    Biopolymers; 1991 Jul 30; 31(8):919-31. PubMed ID: 1782354
    [Abstract] [Full Text] [Related]

  • 19. Hydrogen-bond dynamics in the air-water interface.
    Liu P, Harder E, Berne BJ.
    J Phys Chem B; 2005 Feb 24; 109(7):2949-55. PubMed ID: 16851308
    [Abstract] [Full Text] [Related]

  • 20. Calculation of the entropy and free energy of peptides by molecular dynamics simulations using the hypothetical scanning molecular dynamics method.
    Cheluvaraja S, Meirovitch H.
    J Chem Phys; 2006 Jul 14; 125(2):24905. PubMed ID: 16848609
    [Abstract] [Full Text] [Related]

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