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Journal Abstract Search

291 related items for PubMed ID: 17004834

  • 1. Characterization of nucleobase-amino acid stacking interactions utilized by a DNA repair enzyme.
    Rutledge LR, Campbell-Verduyn LS, Hunter KC, Wetmore SD.
    J Phys Chem B; 2006 Oct 05; 110(39):19652-63. PubMed ID: 17004834
    [Abstract] [Full Text] [Related]

  • 2. Noncovalent interactions involving histidine: the effect of charge on pi-pi stacking and T-shaped interactions with the DNA nucleobases.
    Churchill CD, Wetmore SD.
    J Phys Chem B; 2009 Dec 10; 113(49):16046-58. PubMed ID: 19904910
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  • 3. Computational comparison of the stacking interactions between the aromatic amino acids and the natural or (cationic) methylated nucleobases.
    Rutledge LR, Durst HF, Wetmore SD.
    Phys Chem Chem Phys; 2008 May 21; 10(19):2801-12. PubMed ID: 18464997
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  • 6. Effects of hydrogen-bonding and stacking interactions with amino acids on the acidity of uracil.
    Hunter KC, Millen AL, Wetmore SD.
    J Phys Chem B; 2007 Feb 22; 111(7):1858-71. PubMed ID: 17256895
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  • 7. A computational characterization of the hydrogen-bonding and stacking interactions of hypoxanthine.
    Rutledge LR, Wheaton CA, Wetmore SD.
    Phys Chem Chem Phys; 2007 Jan 28; 9(4):497-509. PubMed ID: 17216066
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  • 8. Comparison of intrinsic stacking energies of ten unique dinucleotide steps in A-RNA and B-DNA duplexes. Can we determine correct order of stability by quantum-chemical calculations?
    Svozil D, Hobza P, Sponer J.
    J Phys Chem B; 2010 Jan 21; 114(2):1191-203. PubMed ID: 20000584
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  • 9. Evaluating how discrete water molecules affect protein-DNA π-π and π(+)-π stacking and T-shaped interactions: the case of histidine-adenine dimers.
    Leavens FM, Churchill CD, Wang S, Wetmore SD.
    J Phys Chem B; 2011 Sep 22; 115(37):10990-1003. PubMed ID: 21809837
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  • 10. A post-SCF complete basis set study on the recognition patterns of uracil and cytosine by aromatic and pi-aromatic stacking interactions with amino acid residues.
    Cysewski P.
    Phys Chem Chem Phys; 2008 May 21; 10(19):2636-45. PubMed ID: 18464978
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  • 11. Evaluating the contributions of desolvation and base-stacking during translesion DNA synthesis.
    Zhang X, Lee I, Berdis AJ.
    Org Biomol Chem; 2004 Jun 21; 2(12):1703-11. PubMed ID: 15188037
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  • 14. DNA base-stacking interactions: a comparison of theoretical calculations with oligonucleotide X-ray crystal structures.
    Hunter CA, Lu XJ.
    J Mol Biol; 1997 Feb 07; 265(5):603-19. PubMed ID: 9048952
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  • 15. Molecular determinants for ATP-binding in proteins: a data mining and quantum chemical analysis.
    Mao L, Wang Y, Liu Y, Hu X.
    J Mol Biol; 2004 Feb 20; 336(3):787-807. PubMed ID: 15095988
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  • 16. How do size-expanded DNA nucleobases enhance duplex stability? Computational analysis of the hydrogen-bonding and stacking ability of xDNA bases.
    McConnell TL, Wetmore SD.
    J Phys Chem B; 2007 Mar 22; 111(11):2999-3009. PubMed ID: 17388411
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  • 17. Electron transfer from aromatic amino acids to guanine and adenine radical cations in pi stacked and T-shaped complexes.
    Butchosa C, Simon S, Voityuk AA.
    Org Biomol Chem; 2010 Apr 21; 8(8):1870-5. PubMed ID: 20449491
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  • 18. Energy contribution of the solvent to the charge migration in DNA.
    Berashevich JA, Chakraborty T.
    J Chem Phys; 2007 Jan 21; 126(3):035104. PubMed ID: 17249903
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  • 19. Intriguing relations of interaction energy components in stacked nucleic acids.
    Langner KM, Sokalski WA, Leszczynski J.
    J Chem Phys; 2007 Sep 21; 127(11):111102. PubMed ID: 17887817
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  • 20. Nature and magnitude of aromatic stacking of nucleic acid bases.
    Sponer J, Riley KE, Hobza P.
    Phys Chem Chem Phys; 2008 May 21; 10(19):2595-610. PubMed ID: 18464974
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