These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


Pubmed for Handhelds

PUBMED FOR HANDHELDS

Journal Abstract Search

371 related items for PubMed ID: 17063490

  • 1. Direct folding simulation of alpha-helices and beta-hairpins based on a single all-atom force field with an implicit solvation model.
    Jang S, Kim E, Pak Y.
    Proteins; 2007 Jan 01; 66(1):53-60. PubMed ID: 17063490
    [Abstract] [Full Text] [Related]

  • 2. Free energy surfaces of miniproteins with a betabetaalpha motif: replica exchange molecular dynamics simulation with an implicit solvation model.
    Jang S, Kim E, Pak Y.
    Proteins; 2006 Mar 15; 62(3):663-71. PubMed ID: 16329109
    [Abstract] [Full Text] [Related]

  • 3. Direct folding studies of various alpha and beta strands using replica exchange molecular dynamics simulation.
    Kim E, Jang S, Pak Y.
    J Chem Phys; 2008 May 07; 128(17):175104. PubMed ID: 18465943
    [Abstract] [Full Text] [Related]

  • 4. Consistent free energy landscapes and thermodynamic properties of small proteins based on a single all-atom force field employing an implicit solvation.
    Kim E, Jang S, Pak Y.
    J Chem Phys; 2007 Oct 14; 127(14):145104. PubMed ID: 17935448
    [Abstract] [Full Text] [Related]

  • 5. All-atom level direct folding simulation of a betabetaalpha miniprotein.
    Jang S, Kim E, Pak Y.
    J Chem Phys; 2008 Mar 14; 128(10):105102. PubMed ID: 18345926
    [Abstract] [Full Text] [Related]

  • 6. All-atom ab initio native structure prediction of a mixed fold (1FME): a comparison of structural and folding characteristics of various beta beta alpha miniproteins.
    Kim E, Jang S, Pak Y.
    J Chem Phys; 2009 Nov 21; 131(19):195102. PubMed ID: 19929079
    [Abstract] [Full Text] [Related]

  • 7. Free energy landscape of protein folding in water: explicit vs. implicit solvent.
    Zhou R.
    Proteins; 2003 Nov 01; 53(2):148-61. PubMed ID: 14517967
    [Abstract] [Full Text] [Related]

  • 8. Free energy surfaces of beta-hairpin and alpha-helical peptides generated by replica exchange molecular dynamics with the AGBNP implicit solvent model.
    Felts AK, Harano Y, Gallicchio E, Levy RM.
    Proteins; 2004 Aug 01; 56(2):310-21. PubMed ID: 15211514
    [Abstract] [Full Text] [Related]

  • 9. Free energy landscapes of a highly structured beta-hairpin peptide and its single mutant.
    Kim E, Yang C, Jang S, Pak Y.
    J Chem Phys; 2008 Oct 28; 129(16):165104. PubMed ID: 19045319
    [Abstract] [Full Text] [Related]

  • 10. Comparative study of generalized born models: Born radii and peptide folding.
    Zhu J, Alexov E, Honig B.
    J Phys Chem B; 2005 Feb 24; 109(7):3008-22. PubMed ID: 16851315
    [Abstract] [Full Text] [Related]

  • 11. Replica exchange molecular dynamics simulations of coarse-grained proteins in implicit solvent.
    Chebaro Y, Dong X, Laghaei R, Derreumaux P, Mousseau N.
    J Phys Chem B; 2009 Jan 08; 113(1):267-74. PubMed ID: 19067549
    [Abstract] [Full Text] [Related]

  • 12. Balancing simulation accuracy and efficiency with the Amber united atom force field.
    Hsieh MJ, Luo R.
    J Phys Chem B; 2010 Mar 04; 114(8):2886-93. PubMed ID: 20131885
    [Abstract] [Full Text] [Related]

  • 13. Balance between alpha and beta structures in ab initio protein folding.
    Best RB, Mittal J.
    J Phys Chem B; 2010 Jul 08; 114(26):8790-8. PubMed ID: 20536262
    [Abstract] [Full Text] [Related]

  • 14. Ab initio folding of helix bundle proteins using molecular dynamics simulations.
    Jang S, Kim E, Shin S, Pak Y.
    J Am Chem Soc; 2003 Dec 03; 125(48):14841-6. PubMed ID: 14640661
    [Abstract] [Full Text] [Related]

  • 15. Identifying native-like protein structures using physics-based potentials.
    Dominy BN, Brooks CL.
    J Comput Chem; 2002 Jan 15; 23(1):147-60. PubMed ID: 11913380
    [Abstract] [Full Text] [Related]

  • 16. Calculation of protein heat capacity from replica-exchange molecular dynamics simulations with different implicit solvent models.
    Yeh IC, Lee MS, Olson MA.
    J Phys Chem B; 2008 Nov 27; 112(47):15064-73. PubMed ID: 18959439
    [Abstract] [Full Text] [Related]

  • 17. Free energy landscape and folding mechanism of a beta-hairpin in explicit water: a replica exchange molecular dynamics study.
    Nguyen PH, Stock G, Mittag E, Hu CK, Li MS.
    Proteins; 2005 Dec 01; 61(4):795-808. PubMed ID: 16240446
    [Abstract] [Full Text] [Related]

  • 18. The influence of different treatments of electrostatic interactions on the thermodynamics of folding of peptides.
    Baumketner A, Shea JE.
    J Phys Chem B; 2005 Nov 17; 109(45):21322-8. PubMed ID: 16853765
    [Abstract] [Full Text] [Related]

  • 19. A minima hopping study of all-atom protein folding and structure prediction.
    Roy S, Goedecker S, Field MJ, Penev E.
    J Phys Chem B; 2009 May 21; 113(20):7315-21. PubMed ID: 19391598
    [Abstract] [Full Text] [Related]

  • 20. Beta-hairpins with native-like and non-native hydrogen bonding patterns could form during the refolding of staphylococcal nuclease.
    Patel S, Sista P, Balaji PV, Sasidhar YU.
    J Mol Graph Model; 2006 Sep 21; 25(1):103-15. PubMed ID: 16386445
    [Abstract] [Full Text] [Related]

    Page: [Next] [New Search]
    of 19.