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Journal Abstract Search

287 related items for PubMed ID: 17098773

  • 1. PEAKS: identification of regulatory motifs by their position in DNA sequences.
    Bellora N, Farré D, Mar Albà M.
    Bioinformatics; 2007 Jan 15; 23(2):243-4. PubMed ID: 17098773
    [Abstract] [Full Text] [Related]

  • 2. Pattern locator: a new tool for finding local sequence patterns in genomic DNA sequences.
    Mrázek J, Xie S.
    Bioinformatics; 2006 Dec 15; 22(24):3099-100. PubMed ID: 17095514
    [Abstract] [Full Text] [Related]

  • 3. On counting position weight matrix matches in a sequence, with application to discriminative motif finding.
    Sinha S.
    Bioinformatics; 2006 Jul 15; 22(14):e454-63. PubMed ID: 16873507
    [Abstract] [Full Text] [Related]

  • 4. Metrics for comparing regulatory sequences on the basis of pattern counts.
    van Helden J.
    Bioinformatics; 2004 Feb 12; 20(3):399-406. PubMed ID: 14764560
    [Abstract] [Full Text] [Related]

  • 5. TFBScluster: a resource for the characterization of transcriptional regulatory networks.
    Donaldson IJ, Chapman M, Göttgens B.
    Bioinformatics; 2005 Jul 01; 21(13):3058-9. PubMed ID: 15855248
    [Abstract] [Full Text] [Related]

  • 6. Apples to apples: improving the performance of motif finders and their significance analysis in the Twilight Zone.
    Ng P, Nagarajan N, Jones N, Keich U.
    Bioinformatics; 2006 Jul 15; 22(14):e393-401. PubMed ID: 16873498
    [Abstract] [Full Text] [Related]

  • 7. A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length.
    Favorov AV, Gelfand MS, Gerasimova AV, Ravcheev DA, Mironov AA, Makeev VJ.
    Bioinformatics; 2005 May 15; 21(10):2240-5. PubMed ID: 15728117
    [Abstract] [Full Text] [Related]

  • 8. i-ADHoRe 2.0: an improved tool to detect degenerated genomic homology using genomic profiles.
    Simillion C, Janssens K, Sterck L, Van de Peer Y.
    Bioinformatics; 2008 Jan 01; 24(1):127-8. PubMed ID: 17947255
    [Abstract] [Full Text] [Related]

  • 9. WindowMasker: window-based masker for sequenced genomes.
    Morgulis A, Gertz EM, Schäffer AA, Agarwala R.
    Bioinformatics; 2006 Jan 15; 22(2):134-41. PubMed ID: 16287941
    [Abstract] [Full Text] [Related]

  • 10. Finding cis-regulatory modules in Drosophila using phylogenetic hidden Markov models.
    Wong WS, Nielsen R.
    Bioinformatics; 2007 Aug 15; 23(16):2031-7. PubMed ID: 17550911
    [Abstract] [Full Text] [Related]

  • 11. MUSA: a parameter free algorithm for the identification of biologically significant motifs.
    Mendes ND, Casimiro AC, Santos PM, Sá-Correia I, Oliveira AL, Freitas AT.
    Bioinformatics; 2006 Dec 15; 22(24):2996-3002. PubMed ID: 17068086
    [Abstract] [Full Text] [Related]

  • 12. MotifCut: regulatory motifs finding with maximum density subgraphs.
    Fratkin E, Naughton BT, Brutlag DL, Batzoglou S.
    Bioinformatics; 2006 Jul 15; 22(14):e150-7. PubMed ID: 16873465
    [Abstract] [Full Text] [Related]

  • 13. Sigma: multiple alignment of weakly-conserved non-coding DNA sequence.
    Siddharthan R.
    BMC Bioinformatics; 2006 Mar 16; 7():143. PubMed ID: 16542424
    [Abstract] [Full Text] [Related]

  • 14. Splice site identification by idlBNs.
    Castelo R, Guigó R.
    Bioinformatics; 2004 Aug 04; 20 Suppl 1():i69-76. PubMed ID: 15262783
    [Abstract] [Full Text] [Related]

  • 15. Using PhyloCon to identify conserved regulatory motifs.
    Wang T.
    Curr Protoc Bioinformatics; 2007 Sep 04; Chapter 2():Unit 2.12. PubMed ID: 18428790
    [Abstract] [Full Text] [Related]

  • 16. SITEBLAST--rapid and sensitive local alignment of genomic sequences employing motif anchors.
    Michael M, Dieterich C, Vingron M.
    Bioinformatics; 2005 May 01; 21(9):2093-4. PubMed ID: 15598827
    [Abstract] [Full Text] [Related]

  • 17. AIMIE: a web-based environment for detection and interpretation of significant sequence motifs in prokaryotic genomes.
    Mrázek J, Xie S, Guo X, Srivastava A.
    Bioinformatics; 2008 Apr 15; 24(8):1041-8. PubMed ID: 18304933
    [Abstract] [Full Text] [Related]

  • 18. A profile-based deterministic sequential Monte Carlo algorithm for motif discovery.
    Liang KC, Wang X, Anastassiou D.
    Bioinformatics; 2008 Jan 01; 24(1):46-55. PubMed ID: 18024972
    [Abstract] [Full Text] [Related]

  • 19. Using RepeatMasker to identify repetitive elements in genomic sequences.
    Chen N.
    Curr Protoc Bioinformatics; 2004 May 01; Chapter 4():Unit 4.10. PubMed ID: 18428725
    [Abstract] [Full Text] [Related]

  • 20. Combining comparative genomics with de novo motif discovery to identify human transcription factor DNA-binding motifs.
    Mao L, Zheng WJ.
    BMC Bioinformatics; 2006 Dec 12; 7 Suppl 4(Suppl 4):S21. PubMed ID: 17217514
    [Abstract] [Full Text] [Related]

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