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Journal Abstract Search

220 related items for PubMed ID: 17098775

  • 1.
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  • 3. Context-specific independence mixture modeling for positional weight matrices.
    Georgi B, Schliep A.
    Bioinformatics; 2006 Jul 15; 22(14):e166-73. PubMed ID: 16873468
    [Abstract] [Full Text] [Related]

  • 4. An equilibrium partitioning model connecting gene expression and cis-motif content.
    Mellor J, DeLisi C.
    Bioinformatics; 2006 Jul 15; 22(14):e368-74. PubMed ID: 16873495
    [Abstract] [Full Text] [Related]

  • 5. Position dependencies in transcription factor binding sites.
    Tomovic A, Oakeley EJ.
    Bioinformatics; 2007 Apr 15; 23(8):933-41. PubMed ID: 17308339
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  • 7. Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE.
    Foat BC, Morozov AV, Bussemaker HJ.
    Bioinformatics; 2006 Jul 15; 22(14):e141-9. PubMed ID: 16873464
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  • 8. RankMotif++: a motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors.
    Chen X, Hughes TR, Morris Q.
    Bioinformatics; 2007 Jul 01; 23(13):i72-9. PubMed ID: 17646348
    [Abstract] [Full Text] [Related]

  • 9. An approach to predict transcription factor DNA binding site specificity based upon gene and transcription factor functional categorization.
    Qian Z, Lu L, Liu X, Cai YD, Li Y.
    Bioinformatics; 2007 Sep 15; 23(18):2449-54. PubMed ID: 17623704
    [Abstract] [Full Text] [Related]

  • 10. Functional inference from non-random distributions of conserved predicted transcription factor binding sites.
    Dieterich C, Rahmann S, Vingron M.
    Bioinformatics; 2004 Aug 04; 20 Suppl 1():i109-15. PubMed ID: 15262788
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  • 11. Eukaryotic transcription factor binding sites--modeling and integrative search methods.
    Hannenhalli S.
    Bioinformatics; 2008 Jun 01; 24(11):1325-31. PubMed ID: 18426806
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  • 12. Transcription factor concentrations versus binding site affinities in the yeast S. cerevisiae.
    Aurell E, d'Hérouël AF, Malmnäs C, Vergassola M.
    Phys Biol; 2007 Jun 22; 4(2):134-43. PubMed ID: 17664657
    [Abstract] [Full Text] [Related]

  • 13. ARTS: accurate recognition of transcription starts in human.
    Sonnenburg S, Zien A, Rätsch G.
    Bioinformatics; 2006 Jul 15; 22(14):e472-80. PubMed ID: 16873509
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  • 14. Comparative analysis of methods for representing and searching for transcription factor binding sites.
    Osada R, Zaslavsky E, Singh M.
    Bioinformatics; 2004 Dec 12; 20(18):3516-25. PubMed ID: 15297295
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  • 15. A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha.
    Li L, Cheng AS, Jin VX, Paik HH, Fan M, Li X, Zhang W, Robarge J, Balch C, Davuluri RV, Kim S, Huang TH, Nephew KP.
    Bioinformatics; 2006 Sep 15; 22(18):2210-6. PubMed ID: 16809387
    [Abstract] [Full Text] [Related]

  • 16. Natural similarity measures between position frequency matrices with an application to clustering.
    Pape UJ, Rahmann S, Vingron M.
    Bioinformatics; 2008 Feb 01; 24(3):350-7. PubMed ID: 18174183
    [Abstract] [Full Text] [Related]

  • 17. High-resolution computational models of genome binding events.
    Qi Y, Rolfe A, MacIsaac KD, Gerber GK, Pokholok D, Zeitlinger J, Danford T, Dowell RD, Fraenkel E, Jaakkola TS, Young RA, Gifford DK.
    Nat Biotechnol; 2006 Aug 01; 24(8):963-70. PubMed ID: 16900145
    [Abstract] [Full Text] [Related]

  • 18. Comparative footprinting of DNA-binding proteins.
    Contreras-Moreira B, Collado-Vides J.
    Bioinformatics; 2006 Jul 15; 22(14):e74-80. PubMed ID: 16873524
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  • 19. Modeling transcription factor binding events to DNA using a random walker/jumper representation on a 1D/2D lattice with different affinity sites.
    Rezania V, Tuszynski J, Hendzel M.
    Phys Biol; 2007 Nov 21; 4(4):256-67. PubMed ID: 18185004
    [Abstract] [Full Text] [Related]

  • 20. A multiple-feature framework for modelling and predicting transcription factor binding sites.
    Pudimat R, Schukat-Talamazzini EG, Backofen R.
    Bioinformatics; 2005 Jul 15; 21(14):3082-8. PubMed ID: 15905283
    [Abstract] [Full Text] [Related]

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