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Journal Abstract Search

308 related items for PubMed ID: 17121778

  • 1. QOMA: quasi-optimal multiple alignment of protein sequences.
    Zhang X, Kahveci T.
    Bioinformatics; 2007 Jan 15; 23(2):162-8. PubMed ID: 17121778
    [Abstract] [Full Text] [Related]

  • 2. SPEM: improving multiple sequence alignment with sequence profiles and predicted secondary structures.
    Zhou H, Zhou Y.
    Bioinformatics; 2005 Sep 15; 21(18):3615-21. PubMed ID: 16020471
    [Abstract] [Full Text] [Related]

  • 3. PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
    Pei J, Grishin NV.
    Bioinformatics; 2007 Apr 01; 23(7):802-8. PubMed ID: 17267437
    [Abstract] [Full Text] [Related]

  • 4. An adaptive and iterative algorithm for refining multiple sequence alignment.
    Wang Y, Li KB.
    Comput Biol Chem; 2004 Apr 01; 28(2):141-8. PubMed ID: 15130542
    [Abstract] [Full Text] [Related]

  • 5. ARCS: an aggregated related column scoring scheme for aligned sequences.
    Song B, Choi JH, Chen G, Szymanski J, Zhang GQ, Tung AK, Kang J, Kim S, Yang J.
    Bioinformatics; 2006 Oct 01; 22(19):2326-32. PubMed ID: 16870930
    [Abstract] [Full Text] [Related]

  • 6. MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities.
    Liu Y, Schmidt B, Maskell DL.
    Bioinformatics; 2010 Aug 15; 26(16):1958-64. PubMed ID: 20576627
    [Abstract] [Full Text] [Related]

  • 7. An iterative refinement algorithm for consistency based multiple structural alignment methods.
    Chen Y, Crippen GM.
    Bioinformatics; 2006 Sep 01; 22(17):2087-93. PubMed ID: 16809393
    [Abstract] [Full Text] [Related]

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  • 10. A Novel algorithm for identifying low-complexity regions in a protein sequence.
    Li X, Kahveci T.
    Bioinformatics; 2006 Dec 15; 22(24):2980-7. PubMed ID: 17018537
    [Abstract] [Full Text] [Related]

  • 11. Variable gap penalty for protein sequence-structure alignment.
    Madhusudhan MS, Marti-Renom MA, Sanchez R, Sali A.
    Protein Eng Des Sel; 2006 Mar 15; 19(3):129-33. PubMed ID: 16423846
    [Abstract] [Full Text] [Related]

  • 12. A generalized affine gap model significantly improves protein sequence alignment accuracy.
    Zachariah MA, Crooks GE, Holbrook SR, Brenner SE.
    Proteins; 2005 Feb 01; 58(2):329-38. PubMed ID: 15562515
    [Abstract] [Full Text] [Related]

  • 13. Predicting protein structure classes from function predictions.
    Sommer I, Rahnenführer J, Domingues FS, de Lichtenberg U, Lengauer T.
    Bioinformatics; 2004 Mar 22; 20(5):770-6. PubMed ID: 14751994
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  • 15. Improvement in the accuracy of multiple sequence alignment program MAFFT.
    Katoh K, Kuma K, Miyata T, Toh H.
    Genome Inform; 2005 Mar 22; 16(1):22-33. PubMed ID: 16362903
    [Abstract] [Full Text] [Related]

  • 16. APDB: a web server to evaluate the accuracy of sequence alignments using structural information.
    Armougom F, Poirot O, Moretti S, Higgins DG, Bucher P, Keduas V, Notredame C.
    Bioinformatics; 2006 Oct 01; 22(19):2439-40. PubMed ID: 17032685
    [Abstract] [Full Text] [Related]

  • 17. Segment-based multiple sequence alignment.
    Rausch T, Emde AK, Weese D, Döring A, Notredame C, Reinert K.
    Bioinformatics; 2008 Aug 15; 24(16):i187-92. PubMed ID: 18689823
    [Abstract] [Full Text] [Related]

  • 18. Incremental window-based protein sequence alignment algorithms.
    Rangwala H, Karypis G.
    Bioinformatics; 2007 Jan 15; 23(2):e17-23. PubMed ID: 17237087
    [Abstract] [Full Text] [Related]

  • 19. Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments.
    Gotoh O.
    J Mol Biol; 1996 Dec 13; 264(4):823-38. PubMed ID: 8980688
    [Abstract] [Full Text] [Related]

  • 20. A new approach for alignment of multiple proteins.
    Zhang X, Kahveci T.
    Pac Symp Biocomput; 2006 Dec 13; ():339-50. PubMed ID: 17094251
    [Abstract] [Full Text] [Related]

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