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Journal Abstract Search

444 related items for PubMed ID: 17137509

  • 1. Cis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequilibrium in eukaryote genomes using frequency distribution curves.
    Berendzen KW, Stüber K, Harter K, Wanke D.
    BMC Bioinformatics; 2006 Nov 30; 7():522. PubMed ID: 17137509
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  • 2. PRECISE: software for prediction of cis-acting regulatory elements.
    Trindade LM, van Berloo R, Fiers M, Visser RG.
    J Hered; 2005 Nov 30; 96(5):618-22. PubMed ID: 16135709
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  • 8. Identification of putative cis-regulatory elements in Cryptosporidium parvum by de novo pattern finding.
    Mullapudi N, Lancto CA, Abrahamsen MS, Kissinger JC.
    BMC Genomics; 2007 Jan 09; 8():13. PubMed ID: 17212834
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  • 9. De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets.
    Niu M, Tabari ES, Su Z.
    BMC Genomics; 2014 Dec 02; 15():1047. PubMed ID: 25442502
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  • 10. A novel pairwise comparison method for in silico discovery of statistically significant cis-regulatory elements in eukaryotic promoter regions: application to Arabidopsis.
    Shamloo-Dashtpagerdi R, Razi H, Aliakbari M, Lindlöf A, Ebrahimi M, Ebrahimie E.
    J Theor Biol; 2015 Jan 07; 364():364-76. PubMed ID: 25303887
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  • 14. Identification of core promoter modules in Drosophila and their application in accurate transcription start site prediction.
    Ohler U.
    Nucleic Acids Res; 2006 Jan 07; 34(20):5943-50. PubMed ID: 17068082
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  • 15. Nucleotide variation of regulatory motifs may lead to distinct expression patterns.
    Segal L, Lapidot M, Solan Z, Ruppin E, Pilpel Y, Horn D.
    Bioinformatics; 2007 Jul 01; 23(13):i440-9. PubMed ID: 17646329
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  • 16. MotifCut: regulatory motifs finding with maximum density subgraphs.
    Fratkin E, Naughton BT, Brutlag DL, Batzoglou S.
    Bioinformatics; 2006 Jul 15; 22(14):e150-7. PubMed ID: 16873465
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  • 17. Motif discovery and motif finding from genome-mapped DNase footprint data.
    Kulakovskiy IV, Favorov AV, Makeev VJ.
    Bioinformatics; 2009 Sep 15; 25(18):2318-25. PubMed ID: 19605419
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  • 18. SPACER: identification of cis-regulatory elements with non-contiguous critical residues.
    Chakravarty A, Carlson JM, Khetani RS, DeZiel CE, Gross RH.
    Bioinformatics; 2007 Apr 15; 23(8):1029-31. PubMed ID: 17470480
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  • 19. Transcription factor binding site identification using the self-organizing map.
    Mahony S, Hendrix D, Golden A, Smith TJ, Rokhsar DS.
    Bioinformatics; 2005 May 01; 21(9):1807-14. PubMed ID: 15647296
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  • 20. Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules.
    Turatsinze JV, Thomas-Chollier M, Defrance M, van Helden J.
    Nat Protoc; 2008 May 01; 3(10):1578-88. PubMed ID: 18802439
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