These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


Pubmed for Handhelds

PUBMED FOR HANDHELDS

Journal Abstract Search

519 related items for PubMed ID: 17182698

  • 1. Robust prediction of consensus secondary structures using averaged base pairing probability matrices.
    Kiryu H, Kin T, Asai K.
    Bioinformatics; 2007 Feb 15; 23(4):434-41. PubMed ID: 17182698
    [Abstract] [Full Text] [Related]

  • 2.
    ; . PubMed ID:
    [No Abstract] [Full Text] [Related]

  • 3. Alignment of RNA base pairing probability matrices.
    Hofacker IL, Bernhart SH, Stadler PF.
    Bioinformatics; 2004 Sep 22; 20(14):2222-7. PubMed ID: 15073017
    [Abstract] [Full Text] [Related]

  • 4. Rfold: an exact algorithm for computing local base pairing probabilities.
    Kiryu H, Kin T, Asai K.
    Bioinformatics; 2008 Feb 01; 24(3):367-73. PubMed ID: 18056736
    [Abstract] [Full Text] [Related]

  • 5.
    ; . PubMed ID:
    [No Abstract] [Full Text] [Related]

  • 6. Prediction of RNA secondary structure using generalized centroid estimators.
    Hamada M, Kiryu H, Sato K, Mituyama T, Asai K.
    Bioinformatics; 2009 Feb 15; 25(4):465-73. PubMed ID: 19095700
    [Abstract] [Full Text] [Related]

  • 7. A local multiple alignment method for detection of non-coding RNA sequences.
    Tabei Y, Asai K.
    Bioinformatics; 2009 Jun 15; 25(12):1498-505. PubMed ID: 19376823
    [Abstract] [Full Text] [Related]

  • 8. Considerations in the identification of functional RNA structural elements in genomic alignments.
    Babak T, Blencowe BJ, Hughes TR.
    BMC Bioinformatics; 2007 Jan 30; 8():33. PubMed ID: 17263882
    [Abstract] [Full Text] [Related]

  • 9. MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing.
    Lindgreen S, Gardner PP, Krogh A.
    Bioinformatics; 2007 Dec 15; 23(24):3304-11. PubMed ID: 18006551
    [Abstract] [Full Text] [Related]

  • 10. Predicting a set of minimal free energy RNA secondary structures common to two sequences.
    Mathews DH.
    Bioinformatics; 2005 May 15; 21(10):2246-53. PubMed ID: 15731207
    [Abstract] [Full Text] [Related]

  • 11. SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments.
    Tabei Y, Tsuda K, Kin T, Asai K.
    Bioinformatics; 2006 Jul 15; 22(14):1723-9. PubMed ID: 16690634
    [Abstract] [Full Text] [Related]

  • 12. RNA secondary structural alignment with conditional random fields.
    Sato K, Sakakibara Y.
    Bioinformatics; 2005 Sep 01; 21 Suppl 2():ii237-42. PubMed ID: 16204111
    [Abstract] [Full Text] [Related]

  • 13. Local RNA base pairing probabilities in large sequences.
    Bernhart SH, Hofacker IL, Stadler PF.
    Bioinformatics; 2006 Mar 01; 22(5):614-5. PubMed ID: 16368769
    [Abstract] [Full Text] [Related]

  • 14. GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing.
    Gerlach W, Giegerich R.
    Bioinformatics; 2006 Mar 15; 22(6):762-4. PubMed ID: 16403789
    [Abstract] [Full Text] [Related]

  • 15. Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction.
    Reeder J, Giegerich R.
    Bioinformatics; 2005 Sep 01; 21(17):3516-23. PubMed ID: 16020472
    [Abstract] [Full Text] [Related]

  • 16. 4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing.
    Seibel PN, Müller T, Dandekar T, Schultz J, Wolf M.
    BMC Bioinformatics; 2006 Nov 13; 7():498. PubMed ID: 17101042
    [Abstract] [Full Text] [Related]

  • 17. RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment.
    Xu X, Ji Y, Stormo GD.
    Bioinformatics; 2007 Aug 01; 23(15):1883-91. PubMed ID: 17537756
    [Abstract] [Full Text] [Related]

  • 18. A method for aligning RNA secondary structures and its application to RNA motif detection.
    Liu J, Wang JT, Hu J, Tian B.
    BMC Bioinformatics; 2005 Apr 07; 6():89. PubMed ID: 15817128
    [Abstract] [Full Text] [Related]

  • 19. RNA structure alignment by a unit-vector approach.
    Capriotti E, Marti-Renom MA.
    Bioinformatics; 2008 Aug 15; 24(16):i112-8. PubMed ID: 18689811
    [Abstract] [Full Text] [Related]

  • 20. Measuring covariation in RNA alignments: physical realism improves information measures.
    Lindgreen S, Gardner PP, Krogh A.
    Bioinformatics; 2006 Dec 15; 22(24):2988-95. PubMed ID: 17038338
    [Abstract] [Full Text] [Related]

    Page: [Next] [New Search]
    of 26.