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Journal Abstract Search

289 related items for PubMed ID: 17228975

  • 21. HiRE-RNA: a high resolution coarse-grained energy model for RNA.
    Pasquali S, Derreumaux P.
    J Phys Chem B; 2010 Sep 23; 114(37):11957-66. PubMed ID: 20795690
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  • 24. Molecular dynamics simulations of polyglutamine aggregation using solvent-free multiscale coarse-grained models.
    Wang Y, Voth GA.
    J Phys Chem B; 2010 Jul 08; 114(26):8735-43. PubMed ID: 20550147
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  • 27. A coarse-grained protein force field for folding and structure prediction.
    Maupetit J, Tuffery P, Derreumaux P.
    Proteins; 2007 Nov 01; 69(2):394-408. PubMed ID: 17600832
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  • 28. Probing the free energy landscape of the FBP28WW domain using multiple techniques.
    Periole X, Allen LR, Tamiola K, Mark AE, Paci E.
    J Comput Chem; 2009 May 01; 30(7):1059-68. PubMed ID: 18942730
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  • 29. Cutoff size need not strongly influence molecular dynamics results for solvated polypeptides.
    Beck DA, Armen RS, Daggett V.
    Biochemistry; 2005 Jan 18; 44(2):609-16. PubMed ID: 15641786
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  • 30. Structural diversity of the soluble trimers of the human amylin(20-29) peptide revealed by molecular dynamics simulations.
    Mo Y, Lu Y, Wei G, Derreumaux P.
    J Chem Phys; 2009 Mar 28; 130(12):125101. PubMed ID: 19334894
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  • 32. Flap opening dynamics in HIV-1 protease explored with a coarse-grained model.
    Tozzini V, Trylska J, Chang CE, McCammon JA.
    J Struct Biol; 2007 Mar 28; 157(3):606-15. PubMed ID: 17029846
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  • 34. Coarse-grained models of protein folding: toy models or predictive tools?
    Clementi C.
    Curr Opin Struct Biol; 2008 Feb 28; 18(1):10-5. PubMed ID: 18160277
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  • 35. Beta-hairpin folding by a model amyloid peptide in solution and at an interface.
    Knecht V.
    J Phys Chem B; 2008 Aug 07; 112(31):9476-83. PubMed ID: 18593146
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  • 36. Self-assembling dipeptides: including solvent degrees of freedom in a coarse-grained model.
    Villa A, van der Vegt NF, Peter C.
    Phys Chem Chem Phys; 2009 Mar 28; 11(12):2068-76. PubMed ID: 19280017
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  • 37. Amyloid-beta(29-42) dimer formations studied by a multicanonical-multioverlap molecular dynamics simulation.
    Itoh SG, Okamoto Y.
    J Phys Chem B; 2008 Mar 13; 112(10):2767-70. PubMed ID: 18271578
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  • 38. Effects of electric field stress on a beta-amyloid peptide.
    Toschi F, Lugli F, Biscarini F, Zerbetto F.
    J Phys Chem B; 2009 Jan 08; 113(1):369-76. PubMed ID: 19063666
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  • 39. Molecular dynamics study of amyloid formation of two Abl-SH3 domain peptides.
    Liepina I, Ventura S, Czaplewski C, Liwo A.
    J Pept Sci; 2006 Dec 08; 12(12):780-9. PubMed ID: 17131290
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  • 40. Simulation study on the disordered state of an Alzheimer's beta amyloid peptide Abeta(12 36) in water consisting of random-structural, beta-structural, and helical clusters.
    Ikebe J, Kamiya N, Ito J, Shindo H, Higo J.
    Protein Sci; 2007 Aug 08; 16(8):1596-608. PubMed ID: 17656579
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