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266 related items for PubMed ID: 17263257
1. Modulation of the self-assembled structure of biomolecules: coarse grained molecular dynamics simulation. Ji B, Huang Y. Mol Cell Biomech; 2006 Sep; 3(3):109-19. PubMed ID: 17263257 [Abstract] [Full Text] [Related]
4. Coarse-grained molecular dynamics simulations of nanopatterning with multivalent inks. Cieplak M, Thompson D. J Chem Phys; 2008 Jun 21; 128(23):234906. PubMed ID: 18570527 [Abstract] [Full Text] [Related]
5. Hierarchical analysis of conformational dynamics in biomolecules: transition networks of metastable states. Noé F, Horenko I, Schütte C, Smith JC. J Chem Phys; 2007 Apr 21; 126(15):155102. PubMed ID: 17461666 [Abstract] [Full Text] [Related]
6. On the influence of solute polarizability on the hydrophobic interaction. Bresme F, Wynveen A. J Chem Phys; 2007 Jan 28; 126(4):044501. PubMed ID: 17286481 [Abstract] [Full Text] [Related]
10. Mimicking coarse-grained simulations without coarse-graining: enhanced sampling by damping short-range interactions. Wei D, Wang F. J Chem Phys; 2010 Aug 28; 133(8):084101. PubMed ID: 20815554 [Abstract] [Full Text] [Related]
11. Molecular dynamics study of polymer conformation as a function of concentration and solvent quality. Zhou Z, Daivis PJ. J Chem Phys; 2009 Jun 14; 130(22):224904. PubMed ID: 19530786 [Abstract] [Full Text] [Related]
12. Generalized coarse-grained model based on point multipole and Gay-Berne potentials. Golubkov PA, Ren P. J Chem Phys; 2006 Aug 14; 125(6):64103. PubMed ID: 16942269 [Abstract] [Full Text] [Related]
13. Structural characterization of the tunnels of Mycobacterium tuberculosis truncated hemoglobin N from molecular dynamics simulations. Daigle R, Guertin M, Lagüe P. Proteins; 2009 May 15; 75(3):735-47. PubMed ID: 19003999 [Abstract] [Full Text] [Related]
14. Coarse-grained models to study dynamics of nanoscale biomolecules and their applications to the ribosome. Trylska J. J Phys Condens Matter; 2010 Nov 17; 22(45):453101. PubMed ID: 21339588 [Abstract] [Full Text] [Related]
16. Separation of time scale and coupling in the motion governed by the coarse-grained and fine degrees of freedom in a polypeptide backbone. Murarka RK, Liwo A, Scheraga HA. J Chem Phys; 2007 Oct 21; 127(15):155103. PubMed ID: 17949219 [Abstract] [Full Text] [Related]
17. Molecular renormalization group coarse-graining of electrolyte solutions: application to aqueous NaCl and KCl. Savelyev A, Papoian GA. J Phys Chem B; 2009 Jun 04; 113(22):7785-93. PubMed ID: 19425537 [Abstract] [Full Text] [Related]
18. Molecular insight into protein conformational transition in hydrophobic charge induction chromatography: a molecular dynamics simulation. Zhang L, Zhao G, Sun Y. J Phys Chem B; 2009 May 14; 113(19):6873-80. PubMed ID: 19374422 [Abstract] [Full Text] [Related]
19. Chain dynamics of poly(ethylene-alt-propylene) melts by means of coarse-grained simulations based on atomistic molecular dynamics. Pérez-Aparicio R, Colmenero J, Alvarez F, Padding JT, Briels WJ. J Chem Phys; 2010 Jan 14; 132(2):024904. PubMed ID: 20095706 [Abstract] [Full Text] [Related]