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Journal Abstract Search

141 related items for PubMed ID: 17277415

  • 1. Predicting protein-protein interactions from protein domains using a set cover approach.
    Huang C, Morcos F, Kanaan SP, Wuchty S, Chen DZ, Izaguirre JA.
    IEEE/ACM Trans Comput Biol Bioinform; 2007; 4(1):78-87. PubMed ID: 17277415
    [Abstract] [Full Text] [Related]

  • 2. Inferring protein-protein interactions from multiple protein domain combinations.
    Kanaan SP, Huang C, Wuchty S, Chen DZ, Izaguirre JA.
    Methods Mol Biol; 2009; 541():43-59. PubMed ID: 19381530
    [Abstract] [Full Text] [Related]

  • 3. AVID: an integrative framework for discovering functional relationships among proteins.
    Jiang T, Keating AE.
    BMC Bioinformatics; 2005 Jun 01; 6():136. PubMed ID: 15929793
    [Abstract] [Full Text] [Related]

  • 4. A matrix based algorithm for Protein-Protein Interaction prediction using Domain-Domain Associations.
    Binny Priya S, Saha S, Anishetty R, Anishetty S.
    J Theor Biol; 2013 Jun 07; 326():36-42. PubMed ID: 23473859
    [Abstract] [Full Text] [Related]

  • 5. Cytoprophet: a Cytoscape plug-in for protein and domain interaction networks inference.
    Morcos F, Lamanna C, Sikora M, Izaguirre J.
    Bioinformatics; 2008 Oct 01; 24(19):2265-6. PubMed ID: 18653520
    [Abstract] [Full Text] [Related]

  • 6. Inferring domain-domain interactions from protein-protein interactions.
    Deng M, Mehta S, Sun F, Chen T.
    Genome Res; 2002 Oct 01; 12(10):1540-8. PubMed ID: 12368246
    [Abstract] [Full Text] [Related]

  • 7. Genome-scale gene function prediction using multiple sources of high-throughput data in yeast Saccharomyces cerevisiae.
    Joshi T, Chen Y, Becker JM, Alexandrov N, Xu D.
    OMICS; 2004 Oct 01; 8(4):322-33. PubMed ID: 15703479
    [Abstract] [Full Text] [Related]

  • 8. DAPID: a 3D-domain annotated protein-protein interaction database.
    Chen YC, Chen HC, Yang JM.
    Genome Inform; 2006 Oct 01; 17(2):206-15. PubMed ID: 17503393
    [Abstract] [Full Text] [Related]

  • 9. Filtering high-throughput protein-protein interaction data using a combination of genomic features.
    Patil A, Nakamura H.
    BMC Bioinformatics; 2005 Apr 18; 6():100. PubMed ID: 15833142
    [Abstract] [Full Text] [Related]

  • 10. Computational prediction of protein-protein interactions.
    Obenauer JC, Yaffe MB.
    Methods Mol Biol; 2004 Apr 18; 261():445-68. PubMed ID: 15064475
    [Abstract] [Full Text] [Related]

  • 11. Prediction of protein-protein interactions using random decision forest framework.
    Chen XW, Liu M.
    Bioinformatics; 2005 Dec 15; 21(24):4394-400. PubMed ID: 16234318
    [Abstract] [Full Text] [Related]

  • 12. Statistical analysis of domains in interacting protein pairs.
    Nye TM, Berzuini C, Gilks WR, Babu MM, Teichmann SA.
    Bioinformatics; 2005 Apr 01; 21(7):993-1001. PubMed ID: 15509600
    [Abstract] [Full Text] [Related]

  • 13. Message-passing algorithms for the prediction of protein domain interactions from protein-protein interaction data.
    Iqbal M, Freitas AA, Johnson CG, Vergassola M.
    Bioinformatics; 2008 Sep 15; 24(18):2064-70. PubMed ID: 18641010
    [Abstract] [Full Text] [Related]

  • 14. From Function to Interaction: A New Paradigm for Accurately Predicting Protein Complexes Based on Protein-to-Protein Interaction Networks.
    Xu B, Guan J.
    IEEE/ACM Trans Comput Biol Bioinform; 2014 Sep 15; 11(4):616-27. PubMed ID: 26356332
    [Abstract] [Full Text] [Related]

  • 15. A lock-and-key model for protein-protein interactions.
    Morrison JL, Breitling R, Higham DJ, Gilbert DR.
    Bioinformatics; 2006 Aug 15; 22(16):2012-9. PubMed ID: 16787977
    [Abstract] [Full Text] [Related]

  • 16. IIIDB: a database for isoform-isoform interactions and isoform network modules.
    Tseng YT, Li W, Chen CH, Zhang S, Chen JJ, Zhou X, Liu CC.
    BMC Genomics; 2015 Aug 15; 16 Suppl 2(Suppl 2):S10. PubMed ID: 25707505
    [Abstract] [Full Text] [Related]

  • 17. A discriminative approach for identifying domain-domain interactions from protein-protein interactions.
    Zhao XM, Chen L, Aihara K.
    Proteins; 2010 Apr 15; 78(5):1243-53. PubMed ID: 20027642
    [Abstract] [Full Text] [Related]

  • 18. Using search engine technology for protein function prediction.
    Chen Z, Cai Z, Li M, Liu B.
    Int J Bioinform Res Appl; 2011 Apr 15; 7(1):101-13. PubMed ID: 21441099
    [Abstract] [Full Text] [Related]

  • 19. Protein complex compositions predicted by structural similarity.
    Davis FP, Braberg H, Shen MY, Pieper U, Sali A, Madhusudhan MS.
    Nucleic Acids Res; 2006 Apr 15; 34(10):2943-52. PubMed ID: 16738133
    [Abstract] [Full Text] [Related]

  • 20. Accurate extraction of functional associations between proteins based on common interaction partners and common domains.
    Okada K, Kanaya S, Asai K.
    Bioinformatics; 2005 May 01; 21(9):2043-8. PubMed ID: 15699027
    [Abstract] [Full Text] [Related]

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