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Journal Abstract Search

175 related items for PubMed ID: 17308339

  • 1. Position dependencies in transcription factor binding sites.
    Tomovic A, Oakeley EJ.
    Bioinformatics; 2007 Apr 15; 23(8):933-41. PubMed ID: 17308339
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  • 2. Informative priors based on transcription factor structural class improve de novo motif discovery.
    Narlikar L, Gordân R, Ohler U, Hartemink AJ.
    Bioinformatics; 2006 Jul 15; 22(14):e384-92. PubMed ID: 16873497
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  • 6. Comparative analysis of methods for representing and searching for transcription factor binding sites.
    Osada R, Zaslavsky E, Singh M.
    Bioinformatics; 2004 Dec 12; 20(18):3516-25. PubMed ID: 15297295
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  • 9. A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha.
    Li L, Cheng AS, Jin VX, Paik HH, Fan M, Li X, Zhang W, Robarge J, Balch C, Davuluri RV, Kim S, Huang TH, Nephew KP.
    Bioinformatics; 2006 Sep 15; 22(18):2210-6. PubMed ID: 16809387
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  • 11. Predicting transcription factor affinities to DNA from a biophysical model.
    Roider HG, Kanhere A, Manke T, Vingron M.
    Bioinformatics; 2007 Jan 15; 23(2):134-41. PubMed ID: 17098775
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  • 13. Finding motifs from all sequences with and without binding sites.
    Leung HC, Chin FY.
    Bioinformatics; 2006 Sep 15; 22(18):2217-23. PubMed ID: 16870937
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  • 15. Non-additivity in protein-DNA binding.
    O'Flanagan RA, Paillard G, Lavery R, Sengupta AM.
    Bioinformatics; 2005 May 15; 21(10):2254-63. PubMed ID: 15746285
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  • 16. Eukaryotic transcription factor binding sites--modeling and integrative search methods.
    Hannenhalli S.
    Bioinformatics; 2008 Jun 01; 24(11):1325-31. PubMed ID: 18426806
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  • 18. SITECON: a tool for detecting conservative conformational and physicochemical properties in transcription factor binding site alignments and for site recognition.
    Oshchepkov DY, Vityaev EE, Grigorovich DA, Ignatieva EV, Khlebodarova TM.
    Nucleic Acids Res; 2004 Jul 01; 32(Web Server issue):W208-12. PubMed ID: 15215382
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  • 20. FOOTER: a web tool for finding mammalian DNA regulatory regions using phylogenetic footprinting.
    Corcoran DL, Feingold E, Benos PV.
    Nucleic Acids Res; 2005 Jul 01; 33(Web Server issue):W442-6. PubMed ID: 15980508
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