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Journal Abstract Search

175 related items for PubMed ID: 17308339

  • 21. Incorporation of splice site probability models for non-canonical introns improves gene structure prediction in plants.
    Sparks ME, Brendel V.
    Bioinformatics; 2005 Nov 01; 21 Suppl 3():iii20-30. PubMed ID: 16306388
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  • 25. Modeling promoter grammars with evolving hidden Markov models.
    Won KJ, Sandelin A, Marstrand TT, Krogh A.
    Bioinformatics; 2008 Aug 01; 24(15):1669-75. PubMed ID: 18535083
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  • 26. SPACER: identification of cis-regulatory elements with non-contiguous critical residues.
    Chakravarty A, Carlson JM, Khetani RS, DeZiel CE, Gross RH.
    Bioinformatics; 2007 Apr 15; 23(8):1029-31. PubMed ID: 17470480
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  • 28. RankMotif++: a motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors.
    Chen X, Hughes TR, Morris Q.
    Bioinformatics; 2007 Jul 01; 23(13):i72-9. PubMed ID: 17646348
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  • 29. Inferring protein-DNA dependencies using motif alignments and mutual information.
    Mahony S, Auron PE, Benos PV.
    Bioinformatics; 2007 Jul 01; 23(13):i297-304. PubMed ID: 17646310
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  • 30. Modeling within-motif dependence for transcription factor binding site predictions.
    Zhou Q, Liu JS.
    Bioinformatics; 2004 Apr 12; 20(6):909-16. PubMed ID: 14751969
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  • 31. Comparative footprinting of DNA-binding proteins.
    Contreras-Moreira B, Collado-Vides J.
    Bioinformatics; 2006 Jul 15; 22(14):e74-80. PubMed ID: 16873524
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  • 32. Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE.
    Foat BC, Morozov AV, Bussemaker HJ.
    Bioinformatics; 2006 Jul 15; 22(14):e141-9. PubMed ID: 16873464
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  • 33. A fractional programming approach to efficient DNA melting temperature calculation.
    Leber M, Kaderali L, Schönhuth A, Schrader R.
    Bioinformatics; 2005 May 15; 21(10):2375-82. PubMed ID: 15769839
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  • 34. Natural similarity measures between position frequency matrices with an application to clustering.
    Pape UJ, Rahmann S, Vingron M.
    Bioinformatics; 2008 Feb 01; 24(3):350-7. PubMed ID: 18174183
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  • 36. Evaluation of computer tools for the prediction of transcription factor binding sites on genomic DNA.
    Roulet E, Fisch I, Junier T, Bucher P, Mermod N.
    In Silico Biol; 1998 Feb 01; 1(1):21-8. PubMed ID: 11471239
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  • 37. Rfold: an exact algorithm for computing local base pairing probabilities.
    Kiryu H, Kin T, Asai K.
    Bioinformatics; 2008 Feb 01; 24(3):367-73. PubMed ID: 18056736
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  • 38. Similarity of position frequency matrices for transcription factor binding sites.
    Schones DE, Sumazin P, Zhang MQ.
    Bioinformatics; 2005 Feb 01; 21(3):307-13. PubMed ID: 15319260
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  • 39. STOP: searching for transcription factor motifs using gene expression.
    Hertzberg L, Izraeli S, Domany E.
    Bioinformatics; 2007 Jul 15; 23(14):1737-43. PubMed ID: 17488754
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  • 40. BEST: binding-site estimation suite of tools.
    Che D, Jensen S, Cai L, Liu JS.
    Bioinformatics; 2005 Jun 15; 21(12):2909-11. PubMed ID: 15814553
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