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193 related items for PubMed ID: 17358368

  • 1. Master equation approach to DNA breathing in heteropolymer DNA.
    Ambjörnsson T, Banik SK, Lomholt MA, Metzler R.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2007 Feb; 75(2 Pt 1):021908. PubMed ID: 17358368
    [Abstract] [Full Text] [Related]

  • 2. Breathing dynamics in heteropolymer DNA.
    Ambjörnsson T, Banik SK, Krichevsky O, Metzler R.
    Biophys J; 2007 Apr 15; 92(8):2674-84. PubMed ID: 17237209
    [Abstract] [Full Text] [Related]

  • 3. A semiflexible chain model of local denaturation in double-stranded DNA.
    Jeon JH, Sung W, Ree FH.
    J Chem Phys; 2006 Apr 28; 124(16):164905. PubMed ID: 16674168
    [Abstract] [Full Text] [Related]

  • 4. Bubble merging in breathing DNA as a vicious walker problem in opposite potentials.
    Pedersen JN, Hansen MS, Novotný T, Ambjörnsson T, Metzler R.
    J Chem Phys; 2009 Apr 28; 130(16):164117. PubMed ID: 19405571
    [Abstract] [Full Text] [Related]

  • 5. Bubble relaxation dynamics in double-stranded DNA.
    Bicout DJ, Kats E.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2004 Jul 28; 70(1 Pt 1):010902. PubMed ID: 15324035
    [Abstract] [Full Text] [Related]

  • 6. Slow closure of denaturation bubbles in DNA: twist matters.
    Dasanna AK, Destainville N, Palmeri J, Manghi M.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2013 May 28; 87(5):052703. PubMed ID: 23767562
    [Abstract] [Full Text] [Related]

  • 7. Thermal denaturation of fluctuating finite DNA chains: the role of bending rigidity in bubble nucleation.
    Palmeri J, Manghi M, Destainville N.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2008 Jan 28; 77(1 Pt 1):011913. PubMed ID: 18351882
    [Abstract] [Full Text] [Related]

  • 8. Healing length and bubble formation in DNA.
    Rapti Z, Smerzi A, Rasmussen KO, Bishop AR, Choi CH, Usheva A.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2006 May 28; 73(5 Pt 1):051902. PubMed ID: 16802962
    [Abstract] [Full Text] [Related]

  • 9. Stochastic dynamics and denaturation of thermalized DNA.
    Deng ML, Zhu WQ.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2008 Feb 28; 77(2 Pt 1):021918. PubMed ID: 18352062
    [Abstract] [Full Text] [Related]

  • 10. Coupled dynamics of DNA breathing and of proteins that selectively bind to single-stranded DNA.
    Ambjörnsson T, Metzler R.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2005 Sep 28; 72(3 Pt 1):030901. PubMed ID: 16241404
    [Abstract] [Full Text] [Related]

  • 11. Bubble statistics and dynamics in double-stranded DNA.
    Alexandrov BS, Wille LT, Rasmussen KØ, Bishop AR, Blagoev KB.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2006 Nov 28; 74(5 Pt 1):050901. PubMed ID: 17279870
    [Abstract] [Full Text] [Related]

  • 12. The effect of sequence correlation on bubble statistics in double-stranded DNA.
    Jeon JH, Park PJ, Sung W.
    J Chem Phys; 2006 Oct 28; 125(16):164901. PubMed ID: 17092133
    [Abstract] [Full Text] [Related]

  • 13. DNA breathing dynamics: analytic results for distribution functions of relevant Brownian functionals.
    Bandyopadhyay M, Gupta S, Segal D.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2011 Mar 28; 83(3 Pt 1):031905. PubMed ID: 21517523
    [Abstract] [Full Text] [Related]

  • 14. Enhanced bubble formation in looped short double-stranded DNA.
    Lee OC, Sung W.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2012 Feb 28; 85(2 Pt 1):021902. PubMed ID: 22463239
    [Abstract] [Full Text] [Related]

  • 15. Conformation of local denaturation in double-stranded DNA.
    Sung W, Jeon JH.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2004 Mar 28; 69(3 Pt 1):031902. PubMed ID: 15089317
    [Abstract] [Full Text] [Related]

  • 16. Dynamics of DNA breathing: weak noise analysis, finite time singularity, and mapping onto the quantum Coulomb problem.
    Fogedby HC, Metzler R.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2007 Dec 28; 76(6 Pt 1):061915. PubMed ID: 18233877
    [Abstract] [Full Text] [Related]

  • 17. Force fluctuations assist nanopore unzipping of DNA.
    Viasnoff V, Chiaruttini N, Muzard J, Bockelmann U.
    J Phys Condens Matter; 2010 Nov 17; 22(45):454122. PubMed ID: 21339609
    [Abstract] [Full Text] [Related]

  • 18. Bubbles and denaturation in DNA.
    van Erp TS, Cuesta-López S, Peyrard M.
    Eur Phys J E Soft Matter; 2006 Aug 17; 20(4):421-34. PubMed ID: 16957832
    [Abstract] [Full Text] [Related]

  • 19. Sequence sensitivity of breathing dynamics in heteropolymer DNA.
    Ambjörnsson T, Banik SK, Krichevsky O, Metzler R.
    Phys Rev Lett; 2006 Sep 22; 97(12):128105. PubMed ID: 17026004
    [Abstract] [Full Text] [Related]

  • 20. Melting behavior and different bound states in three-stranded DNA models.
    Maji J, Bhattacharjee SM, Seno F, Trovato A.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2014 Jan 22; 89(1):012121. PubMed ID: 24580186
    [Abstract] [Full Text] [Related]

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