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Journal Abstract Search

191 related items for PubMed ID: 17394657

  • 1. Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: high-resolution annotation for microarrays.
    Lu J, Lee JC, Salit ML, Cam MC.
    BMC Bioinformatics; 2007 Mar 29; 8():108. PubMed ID: 17394657
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  • 2. Novel definition files for human GeneChips based on GeneAnnot.
    Ferrari F, Bortoluzzi S, Coppe A, Sirota A, Safran M, Shmoish M, Ferrari S, Lancet D, Danieli GA, Bicciato S.
    BMC Bioinformatics; 2007 Nov 15; 8():446. PubMed ID: 18005434
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  • 3. Calculation of reliable transcript levels of annotated genes on the basis of multiple probe-sets in Affymetrix microarrays.
    Jaksik R, Polańska J, Herok R, Rzeszowska-Wolny J.
    Acta Biochim Pol; 2009 Nov 15; 56(2):271-7. PubMed ID: 19436837
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  • 5. Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data.
    Yu H, Wang F, Tu K, Xie L, Li YY, Li YX.
    BMC Bioinformatics; 2007 Jun 11; 8():194. PubMed ID: 17559689
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  • 8. Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements.
    Carter SL, Eklund AC, Mecham BH, Kohane IS, Szallasi Z.
    BMC Bioinformatics; 2005 Apr 25; 6():107. PubMed ID: 15850491
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  • 9. AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets.
    Liu H, Zeeberg BR, Qu G, Koru AG, Ferrucci A, Kahn A, Ryan MC, Nuhanovic A, Munson PJ, Reinhold WC, Kane DW, Weinstein JN.
    Bioinformatics; 2007 Sep 15; 23(18):2385-90. PubMed ID: 17660211
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  • 10. GATExplorer: genomic and transcriptomic explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs.
    Risueño A, Fontanillo C, Dinger ME, De Las Rivas J.
    BMC Bioinformatics; 2010 Apr 29; 11():221. PubMed ID: 20429936
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  • 12. Framework for reanalysis of publicly available Affymetrix® GeneChip® data sets based on functional regions of interest.
    Saka E, Harrison BJ, West K, Petruska JC, Rouchka EC.
    BMC Genomics; 2017 Dec 06; 18(Suppl 10):875. PubMed ID: 29244006
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  • 13. Comparisons of annotation predictions for affymetrix GeneChips.
    Stalteri M, Harrison A.
    Appl Bioinformatics; 2006 Dec 06; 5(4):237-48. PubMed ID: 17140270
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  • 14. Amplification of the Gene Ontology annotation of Affymetrix probe sets.
    Muro EM, Perez-Iratxeta C, Andrade-Navarro MA.
    BMC Bioinformatics; 2006 Mar 20; 7():159. PubMed ID: 16549014
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  • 15. Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays.
    Seo J, Bakay M, Chen YW, Hilmer S, Shneiderman B, Hoffman EP.
    Bioinformatics; 2004 Nov 01; 20(16):2534-44. PubMed ID: 15117752
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  • 16. Estimating the similarity of alternative Affymetrix probe sets using transcriptional networks.
    Bellis M.
    BMC Res Notes; 2013 Mar 21; 6():107. PubMed ID: 23517579
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  • 19. Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data.
    Rambaldi D, Felice B, Praz V, Bucher P, Cittaro D, Guffanti A.
    BMC Bioinformatics; 2007 Mar 08; 8 Suppl 1(Suppl 1):S17. PubMed ID: 17430561
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  • 20. ChipInfo: Software for extracting gene annotation and gene ontology information for microarray analysis.
    Zhong S, Li C, Wong WH.
    Nucleic Acids Res; 2003 Jul 01; 31(13):3483-6. PubMed ID: 12824349
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