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Journal Abstract Search

454 related items for PubMed ID: 17448222

  • 1. A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat.
    Alberts R, Terpstra P, Hardonk M, Bystrykh LV, de Haan G, Breitling R, Nap JP, Jansen RC.
    BMC Bioinformatics; 2007 Apr 20; 8():132. PubMed ID: 17448222
    [Abstract] [Full Text] [Related]

  • 2. Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data.
    Yu H, Wang F, Tu K, Xie L, Li YY, Li YX.
    BMC Bioinformatics; 2007 Jun 11; 8():194. PubMed ID: 17559689
    [Abstract] [Full Text] [Related]

  • 3. Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data.
    Rambaldi D, Felice B, Praz V, Bucher P, Cittaro D, Guffanti A.
    BMC Bioinformatics; 2007 Mar 08; 8 Suppl 1(Suppl 1):S17. PubMed ID: 17430561
    [Abstract] [Full Text] [Related]

  • 4. Optimization of probe coverage for high-resolution oligonucleotide aCGH.
    Lipson D, Yakhini Z, Aumann Y.
    Bioinformatics; 2007 Jan 15; 23(2):e77-83. PubMed ID: 17237109
    [Abstract] [Full Text] [Related]

  • 5. affyGG: computational protocols for genetical genomics with Affymetrix arrays.
    Alberts R, Vera G, Jansen RC.
    Bioinformatics; 2008 Feb 01; 24(3):433-4. PubMed ID: 18086686
    [Abstract] [Full Text] [Related]

  • 6. Increased measurement accuracy for sequence-verified microarray probes.
    Mecham BH, Wetmore DZ, Szallasi Z, Sadovsky Y, Kohane I, Mariani TJ.
    Physiol Genomics; 2004 Aug 11; 18(3):308-15. PubMed ID: 15161964
    [Abstract] [Full Text] [Related]

  • 7. Long versus short oligonucleotide microarrays for the study of gene expression in nonhuman primates.
    Walker SJ, Wang Y, Grant KA, Chan F, Hellmann GM.
    J Neurosci Methods; 2006 Apr 15; 152(1-2):179-89. PubMed ID: 16253343
    [Abstract] [Full Text] [Related]

  • 8. Characterization of mismatch and high-signal intensity probes associated with Affymetrix genechips.
    Wang Y, Miao ZH, Pommier Y, Kawasaki ES, Player A.
    Bioinformatics; 2007 Aug 15; 23(16):2088-95. PubMed ID: 17553856
    [Abstract] [Full Text] [Related]

  • 9. Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data.
    Dai M, Wang P, Boyd AD, Kostov G, Athey B, Jones EG, Bunney WE, Myers RM, Speed TP, Akil H, Watson SJ, Meng F.
    Nucleic Acids Res; 2005 Nov 10; 33(20):e175. PubMed ID: 16284200
    [Abstract] [Full Text] [Related]

  • 10. AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets.
    Liu H, Zeeberg BR, Qu G, Koru AG, Ferrucci A, Kahn A, Ryan MC, Nuhanovic A, Munson PJ, Reinhold WC, Kane DW, Weinstein JN.
    Bioinformatics; 2007 Sep 15; 23(18):2385-90. PubMed ID: 17660211
    [Abstract] [Full Text] [Related]

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  • 12. Probe rank approaches for gene selection in oligonucleotide arrays with a small number of replicates.
    Chen DT, Chen JJ, Soong SJ.
    Bioinformatics; 2005 Jun 15; 21(12):2861-6. PubMed ID: 15814562
    [Abstract] [Full Text] [Related]

  • 13. Assessing the need for sequence-based normalization in tiling microarray experiments.
    Royce TE, Rozowsky JS, Gerstein MB.
    Bioinformatics; 2007 Apr 15; 23(8):988-97. PubMed ID: 17387113
    [Abstract] [Full Text] [Related]

  • 14. Identification of novel epididymal genes by expression profiling and in silico gene discovery.
    Jalkanen J, Shariatmadari R, Pujianto DA, Sipilä P, Huhtaniemi I, Poutanen M.
    Mol Cell Endocrinol; 2006 May 16; 250(1-2):163-8. PubMed ID: 16413671
    [Abstract] [Full Text] [Related]

  • 15. Probes containing runs of guanines provide insights into the biophysics and bioinformatics of Affymetrix GeneChips.
    Langdon WB, Upton GJ, Harrison AP.
    Brief Bioinform; 2009 May 16; 10(3):259-77. PubMed ID: 19359259
    [Abstract] [Full Text] [Related]

  • 16. Application of z-score transformation to Affymetrix data.
    Cheadle C, Cho-Chung YS, Becker KG, Vawter MP.
    Appl Bioinformatics; 2003 May 16; 2(4):209-17. PubMed ID: 15130792
    [Abstract] [Full Text] [Related]

  • 17. Optimal robust non-unique probe selection using Integer Linear Programming.
    Klau GW, Rahmann S, Schliep A, Vingron M, Reinert K.
    Bioinformatics; 2004 Aug 04; 20 Suppl 1():i186-93. PubMed ID: 15262798
    [Abstract] [Full Text] [Related]

  • 18. Quality assessment of the Affymetrix U133A&B probesets by target sequence mapping and expression data analysis.
    Orlov YL, Zhou J, Lipovich L, Shahab A, Kuznetsov VA.
    In Silico Biol; 2007 Aug 04; 7(3):241-60. PubMed ID: 18415975
    [Abstract] [Full Text] [Related]

  • 19. CrossChip: a system supporting comparative analysis of different generations of Affymetrix arrays.
    Kong SW, Hwang KB, Kim RD, Zhang BT, Greenberg SA, Kohane IS, Park PJ.
    Bioinformatics; 2005 May 01; 21(9):2116-7. PubMed ID: 15684227
    [Abstract] [Full Text] [Related]

  • 20. Genotyping over 100,000 SNPs on a pair of oligonucleotide arrays.
    Matsuzaki H, Dong S, Loi H, Di X, Liu G, Hubbell E, Law J, Berntsen T, Chadha M, Hui H, Yang G, Kennedy GC, Webster TA, Cawley S, Walsh PS, Jones KW, Fodor SP, Mei R.
    Nat Methods; 2004 Nov 01; 1(2):109-11. PubMed ID: 15782172
    [Abstract] [Full Text] [Related]

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