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Journal Abstract Search

244 related items for PubMed ID: 17470480

  • 1. SPACER: identification of cis-regulatory elements with non-contiguous critical residues.
    Chakravarty A, Carlson JM, Khetani RS, DeZiel CE, Gross RH.
    Bioinformatics; 2007 Apr 15; 23(8):1029-31. PubMed ID: 17470480
    [Abstract] [Full Text] [Related]

  • 2. ClusterDraw web server: a tool to identify and visualize clusters of binding motifs for transcription factors.
    Papatsenko D.
    Bioinformatics; 2007 Apr 15; 23(8):1032-4. PubMed ID: 17308342
    [Abstract] [Full Text] [Related]

  • 3. MUSA: a parameter free algorithm for the identification of biologically significant motifs.
    Mendes ND, Casimiro AC, Santos PM, Sá-Correia I, Oliveira AL, Freitas AT.
    Bioinformatics; 2006 Dec 15; 22(24):2996-3002. PubMed ID: 17068086
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  • 4. Apples to apples: improving the performance of motif finders and their significance analysis in the Twilight Zone.
    Ng P, Nagarajan N, Jones N, Keich U.
    Bioinformatics; 2006 Jul 15; 22(14):e393-401. PubMed ID: 16873498
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  • 7. Identifying cis-regulatory modules by combining comparative and compositional analysis of DNA.
    Pierstorff N, Bergman CM, Wiehe T.
    Bioinformatics; 2006 Dec 01; 22(23):2858-64. PubMed ID: 17032682
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  • 9. A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length.
    Favorov AV, Gelfand MS, Gerasimova AV, Ravcheev DA, Mironov AA, Makeev VJ.
    Bioinformatics; 2005 May 15; 21(10):2240-5. PubMed ID: 15728117
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  • 10. Informative priors based on transcription factor structural class improve de novo motif discovery.
    Narlikar L, Gordân R, Ohler U, Hartemink AJ.
    Bioinformatics; 2006 Jul 15; 22(14):e384-92. PubMed ID: 16873497
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  • 11. MotifCut: regulatory motifs finding with maximum density subgraphs.
    Fratkin E, Naughton BT, Brutlag DL, Batzoglou S.
    Bioinformatics; 2006 Jul 15; 22(14):e150-7. PubMed ID: 16873465
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  • 12. Detection of generic spaced motifs using submotif pattern mining.
    Wijaya E, Rajaraman K, Yiu SM, Sung WK.
    Bioinformatics; 2007 Jun 15; 23(12):1476-85. PubMed ID: 17483509
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  • 13. Predicting transcription factor binding sites using local over-representation and comparative genomics.
    Defrance M, Touzet H.
    BMC Bioinformatics; 2006 Aug 31; 7():396. PubMed ID: 16945132
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  • 15. On counting position weight matrix matches in a sequence, with application to discriminative motif finding.
    Sinha S.
    Bioinformatics; 2006 Jul 15; 22(14):e454-63. PubMed ID: 16873507
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  • 16. Comparative genomics reveals unusually long motifs in mammalian genomes.
    Jones NC, Pevzner PA.
    Bioinformatics; 2006 Jul 15; 22(14):e236-42. PubMed ID: 16873477
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  • 17. BioOptimizer: a Bayesian scoring function approach to motif discovery.
    Jensen ST, Liu JS.
    Bioinformatics; 2004 Jul 10; 20(10):1557-64. PubMed ID: 14962923
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