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Journal Abstract Search

511 related items for PubMed ID: 17485471

  • 1. SCOPE: a web server for practical de novo motif discovery.
    Carlson JM, Chakravarty A, DeZiel CE, Gross RH.
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W259-64. PubMed ID: 17485471
    [Abstract] [Full Text] [Related]

  • 2. A novel ensemble learning method for de novo computational identification of DNA binding sites.
    Chakravarty A, Carlson JM, Khetani RS, Gross RH.
    BMC Bioinformatics; 2007 Jul 12; 8():249. PubMed ID: 17626633
    [Abstract] [Full Text] [Related]

  • 3. STAMP: a web tool for exploring DNA-binding motif similarities.
    Mahony S, Benos PV.
    Nucleic Acids Res; 2007 Jul 12; 35(Web Server issue):W253-8. PubMed ID: 17478497
    [Abstract] [Full Text] [Related]

  • 4. MUSA: a parameter free algorithm for the identification of biologically significant motifs.
    Mendes ND, Casimiro AC, Santos PM, Sá-Correia I, Oliveira AL, Freitas AT.
    Bioinformatics; 2006 Dec 15; 22(24):2996-3002. PubMed ID: 17068086
    [Abstract] [Full Text] [Related]

  • 5. Using SCOPE to identify potential regulatory motifs in coregulated genes.
    Martyanov V, Gross RH.
    J Vis Exp; 2011 May 31; (51):. PubMed ID: 21673638
    [Abstract] [Full Text] [Related]

  • 6. SPACER: identification of cis-regulatory elements with non-contiguous critical residues.
    Chakravarty A, Carlson JM, Khetani RS, DeZiel CE, Gross RH.
    Bioinformatics; 2007 Apr 15; 23(8):1029-31. PubMed ID: 17470480
    [Abstract] [Full Text] [Related]

  • 7. WebMOTIFS: automated discovery, filtering and scoring of DNA sequence motifs using multiple programs and Bayesian approaches.
    Romer KA, Kayombya GR, Fraenkel E.
    Nucleic Acids Res; 2007 Jul 15; 35(Web Server issue):W217-20. PubMed ID: 17584794
    [Abstract] [Full Text] [Related]

  • 8. ClusterDraw web server: a tool to identify and visualize clusters of binding motifs for transcription factors.
    Papatsenko D.
    Bioinformatics; 2007 Apr 15; 23(8):1032-4. PubMed ID: 17308342
    [Abstract] [Full Text] [Related]

  • 9. Informative priors based on transcription factor structural class improve de novo motif discovery.
    Narlikar L, Gordân R, Ohler U, Hartemink AJ.
    Bioinformatics; 2006 Jul 15; 22(14):e384-92. PubMed ID: 16873497
    [Abstract] [Full Text] [Related]

  • 10. MYBS: a comprehensive web server for mining transcription factor binding sites in yeast.
    Tsai HK, Chou MY, Shih CH, Huang GT, Chang TH, Li WH.
    Nucleic Acids Res; 2007 Jul 15; 35(Web Server issue):W221-6. PubMed ID: 17537814
    [Abstract] [Full Text] [Related]

  • 11. Bounded search for de novo identification of degenerate cis-regulatory elements.
    Carlson JM, Chakravarty A, Khetani RS, Gross RH.
    BMC Bioinformatics; 2006 May 15; 7():254. PubMed ID: 16700920
    [Abstract] [Full Text] [Related]

  • 12. MotifVoter: a novel ensemble method for fine-grained integration of generic motif finders.
    Wijaya E, Yiu SM, Son NT, Kanagasabai R, Sung WK.
    Bioinformatics; 2008 Oct 15; 24(20):2288-95. PubMed ID: 18697768
    [Abstract] [Full Text] [Related]

  • 13. EMD: an ensemble algorithm for discovering regulatory motifs in DNA sequences.
    Hu J, Yang YD, Kihara D.
    BMC Bioinformatics; 2006 Jul 13; 7():342. PubMed ID: 16839417
    [Abstract] [Full Text] [Related]

  • 14. On counting position weight matrix matches in a sequence, with application to discriminative motif finding.
    Sinha S.
    Bioinformatics; 2006 Jul 15; 22(14):e454-63. PubMed ID: 16873507
    [Abstract] [Full Text] [Related]

  • 15. Sequence features of DNA binding sites reveal structural class of associated transcription factor.
    Narlikar L, Hartemink AJ.
    Bioinformatics; 2006 Jan 15; 22(2):157-63. PubMed ID: 16267080
    [Abstract] [Full Text] [Related]

  • 16. A generic motif discovery algorithm for sequential data.
    Jensen KL, Styczynski MP, Rigoutsos I, Stephanopoulos GN.
    Bioinformatics; 2006 Jan 01; 22(1):21-8. PubMed ID: 16257985
    [Abstract] [Full Text] [Related]

  • 17. Inferring protein-DNA dependencies using motif alignments and mutual information.
    Mahony S, Auron PE, Benos PV.
    Bioinformatics; 2007 Jul 01; 23(13):i297-304. PubMed ID: 17646310
    [Abstract] [Full Text] [Related]

  • 18. Improved benchmarks for computational motif discovery.
    Sandve GK, Abul O, Walseng V, Drabløs F.
    BMC Bioinformatics; 2007 Jun 08; 8():193. PubMed ID: 17559676
    [Abstract] [Full Text] [Related]

  • 19. TrawlerWeb: an online de novo motif discovery tool for next-generation sequencing datasets.
    Dang LT, Tondl M, Chiu MHH, Revote J, Paten B, Tano V, Tokolyi A, Besse F, Quaife-Ryan G, Cumming H, Drvodelic MJ, Eichenlaub MP, Hallab JC, Stolper JS, Rossello FJ, Bogoyevitch MA, Jans DA, Nim HT, Porrello ER, Hudson JE, Ramialison M.
    BMC Genomics; 2018 Apr 05; 19(1):238. PubMed ID: 29621972
    [Abstract] [Full Text] [Related]

  • 20. An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments.
    Liu XS, Brutlag DL, Liu JS.
    Nat Biotechnol; 2002 Aug 05; 20(8):835-9. PubMed ID: 12101404
    [Abstract] [Full Text] [Related]

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