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Journal Abstract Search

479 related items for PubMed ID: 17503359

  • 1. A statistical framework for genome-wide discovery of biomarker splice variations with GeneChip Human Exon 1.0 ST Arrays.
    Yoshida R, Numata K, Imoto S, Nagasaki M, Doi A, Ueno K, Miyano S.
    Genome Inform; 2006; 17(1):88-99. PubMed ID: 17503359
    [Abstract] [Full Text] [Related]

  • 2. Gene expression and isoform variation analysis using Affymetrix Exon Arrays.
    Bemmo A, Benovoy D, Kwan T, Gaffney DJ, Jensen RV, Majewski J.
    BMC Genomics; 2008 Nov 07; 9():529. PubMed ID: 18990248
    [Abstract] [Full Text] [Related]

  • 3. Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array.
    Gardina PJ, Clark TA, Shimada B, Staples MK, Yang Q, Veitch J, Schweitzer A, Awad T, Sugnet C, Dee S, Davies C, Williams A, Turpaz Y.
    BMC Genomics; 2006 Dec 27; 7():325. PubMed ID: 17192196
    [Abstract] [Full Text] [Related]

  • 4. easyExon--a Java-based GUI tool for processing and visualization of Affymetrix exon array data.
    Chang TY, Li YY, Jen CH, Yang TP, Lin CH, Hsu MT, Wang HW.
    BMC Bioinformatics; 2008 Oct 14; 9():432. PubMed ID: 18851762
    [Abstract] [Full Text] [Related]

  • 5. Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data.
    Rambaldi D, Felice B, Praz V, Bucher P, Cittaro D, Guffanti A.
    BMC Bioinformatics; 2007 Mar 08; 8 Suppl 1(Suppl 1):S17. PubMed ID: 17430561
    [Abstract] [Full Text] [Related]

  • 6. Alternative splicing regulatory network reconstruction from exon array data.
    Qu K, Yesnik AM, Ortoleva PJ.
    J Theor Biol; 2010 Apr 21; 263(4):471-80. PubMed ID: 20043923
    [Abstract] [Full Text] [Related]

  • 7. Inferring global levels of alternative splicing isoforms using a generative model of microarray data.
    Shai O, Morris QD, Blencowe BJ, Frey BJ.
    Bioinformatics; 2006 Mar 01; 22(5):606-13. PubMed ID: 16403798
    [Abstract] [Full Text] [Related]

  • 8. Exon-based clustering of murine breast tumor transcriptomes reveals alternative exons whose expression is associated with metastasis.
    Dutertre M, Lacroix-Triki M, Driouch K, de la Grange P, Gratadou L, Beck S, Millevoi S, Tazi J, Lidereau R, Vagner S, Auboeuf D.
    Cancer Res; 2010 Feb 01; 70(3):896-905. PubMed ID: 20103641
    [Abstract] [Full Text] [Related]

  • 9. Profiling alternative splicing on fiber-optic arrays.
    Yeakley JM, Fan JB, Doucet D, Luo L, Wickham E, Ye Z, Chee MS, Fu XD.
    Nat Biotechnol; 2002 Apr 01; 20(4):353-8. PubMed ID: 11923840
    [Abstract] [Full Text] [Related]

  • 10. Candidates for tumor-specific alternative splicing.
    Okumura M, Kondo S, Ogata M, Kanemoto S, Murakami T, Yanagida K, Saito A, Imaizumi K.
    Biochem Biophys Res Commun; 2005 Aug 19; 334(1):23-9. PubMed ID: 16018876
    [Abstract] [Full Text] [Related]

  • 11. Exon Array Analyzer: a web interface for Affymetrix exon array analysis.
    Gellert P, Uchida S, Braun T.
    Bioinformatics; 2009 Dec 15; 25(24):3323-4. PubMed ID: 19808879
    [Abstract] [Full Text] [Related]

  • 12. Leveraging two-way probe-level block design for identifying differential gene expression with high-density oligonucleotide arrays.
    Barrera L, Benner C, Tao YC, Winzeler E, Zhou Y.
    BMC Bioinformatics; 2004 Apr 20; 5():42. PubMed ID: 15099405
    [Abstract] [Full Text] [Related]

  • 13. ASTALAVISTA: dynamic and flexible analysis of alternative splicing events in custom gene datasets.
    Foissac S, Sammeth M.
    Nucleic Acids Res; 2007 Jul 20; 35(Web Server issue):W297-9. PubMed ID: 17485470
    [Abstract] [Full Text] [Related]

  • 14. Cross platform microarray analysis for robust identification of differentially expressed genes.
    Bosotti R, Locatelli G, Healy S, Scacheri E, Sartori L, Mercurio C, Calogero R, Isacchi A.
    BMC Bioinformatics; 2007 Mar 08; 8 Suppl 1(Suppl 1):S5. PubMed ID: 17430572
    [Abstract] [Full Text] [Related]

  • 15. Changes in alternative splicing of human and mouse genes are accompanied by faster evolution of constitutive exons.
    Cusack BP, Wolfe KH.
    Mol Biol Evol; 2005 Nov 08; 22(11):2198-208. PubMed ID: 16049198
    [Abstract] [Full Text] [Related]

  • 16. A statistical method for predicting splice variants between two groups of samples using GeneChip expression array data.
    Fan W, Khalid N, Hallahan AR, Olson JM, Zhao LP.
    Theor Biol Med Model; 2006 Apr 07; 3():19. PubMed ID: 16603076
    [Abstract] [Full Text] [Related]

  • 17. Identification of differentially regulated splice variants and novel exons in glial brain tumors using exon expression arrays.
    French PJ, Peeters J, Horsman S, Duijm E, Siccama I, van den Bent MJ, Luider TM, Kros JM, van der Spek P, Sillevis Smitt PA.
    Cancer Res; 2007 Jun 15; 67(12):5635-42. PubMed ID: 17575129
    [Abstract] [Full Text] [Related]

  • 18. The effect of GeneChip gene definitions on the microarray study of cancers.
    Lu X, Zhang X.
    Bioessays; 2006 Jul 15; 28(7):739-46. PubMed ID: 16850407
    [Abstract] [Full Text] [Related]

  • 19. Splicing factors are differentially expressed in tumors.
    Kirschbaum-Slager N, Lopes GM, Galante PA, Riggins GJ, de Souza SJ.
    Genet Mol Res; 2004 Dec 30; 3(4):512-20. PubMed ID: 15688317
    [Abstract] [Full Text] [Related]

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