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Journal Abstract Search

135 related items for PubMed ID: 17508774

  • 1. Molecular dynamics study of intrinsic stability in six RNA terminal loop motifs.
    Nyström B, Nilsson L.
    J Biomol Struct Dyn; 2007 Jun; 24(6):525-36. PubMed ID: 17508774
    [Abstract] [Full Text] [Related]

  • 2. Sequence dependence of the stability of RNA hairpin molecules with six nucleotide loops.
    Vecenie CJ, Morrow CV, Zyra A, Serra MJ.
    Biochemistry; 2006 Feb 07; 45(5):1400-7. PubMed ID: 16445282
    [Abstract] [Full Text] [Related]

  • 3. All-atom Monte Carlo simulation of GCAA RNA folding.
    Nivón LG, Shakhnovich EI.
    J Mol Biol; 2004 Nov 12; 344(1):29-45. PubMed ID: 15504400
    [Abstract] [Full Text] [Related]

  • 4. Molecular dynamics simulations of the denaturation and refolding of an RNA tetraloop.
    Li W, Ma B, Shapiro B.
    J Biomol Struct Dyn; 2001 Dec 12; 19(3):381-96. PubMed ID: 11790138
    [Abstract] [Full Text] [Related]

  • 5. Structural dynamics of the box C/D RNA kink-turn and its complex with proteins: the role of the A-minor 0 interaction, long-residency water bridges, and structural ion-binding sites revealed by molecular simulations.
    Spacková N, Réblová K, Sponer J.
    J Phys Chem B; 2010 Aug 19; 114(32):10581-93. PubMed ID: 20701388
    [Abstract] [Full Text] [Related]

  • 6. RNA simulations: probing hairpin unfolding and the dynamics of a GNRA tetraloop.
    Sorin EJ, Engelhardt MA, Herschlag D, Pande VS.
    J Mol Biol; 2002 Apr 05; 317(4):493-506. PubMed ID: 11955005
    [Abstract] [Full Text] [Related]

  • 7. Molecular dynamics simulation of the structure, dynamics, and thermostability of the RNA hairpins uCACGg and cUUCGg.
    Villa A, Widjajakusuma E, Stock G.
    J Phys Chem B; 2008 Jan 10; 112(1):134-42. PubMed ID: 18069816
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  • 10. Dynamics and stability of GCAA tetraloops with 2-aminopurine and purine substitutions.
    Sarzynska J, Kulinski T.
    J Biomol Struct Dyn; 2005 Feb 10; 22(4):425-39. PubMed ID: 15588106
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  • 13. A novel RNA motif based on the structure of unusually stable 2',5'-linked r(UUCG) loops.
    Denisov AY, Hannoush RN, Gehring K, Damha MJ.
    J Am Chem Soc; 2003 Sep 24; 125(38):11525-31. PubMed ID: 13129354
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  • 14. NMR structure of stem-loop SL2 of the HIV-1 psi RNA packaging signal reveals a novel A-U-A base-triple platform.
    Amarasinghe GK, De Guzman RN, Turner RB, Summers MF.
    J Mol Biol; 2000 May 26; 299(1):145-56. PubMed ID: 10860728
    [Abstract] [Full Text] [Related]

  • 15. RNA structure and dynamics: a base pairing perspective.
    Halder S, Bhattacharyya D.
    Prog Biophys Mol Biol; 2013 Nov 26; 113(2):264-83. PubMed ID: 23891726
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  • 16. The 5' stem-loop from human U4 snRNA adopts a novel conformation stabilized by G-C and G-U base pairs.
    Sahasrabudhe PV, Sun J, Gmeiner WH.
    J Biomol Struct Dyn; 1997 Apr 26; 14(5):567-77. PubMed ID: 9130079
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  • 17. Structural features of a six-nucleotide RNA hairpin loop found in ribosomal RNA.
    Fountain MA, Serra MJ, Krugh TR, Turner DH.
    Biochemistry; 1996 May 28; 35(21):6539-48. PubMed ID: 8639602
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  • 18. Solution structure of an RNA internal loop with three consecutive sheared GA pairs.
    Chen G, Znosko BM, Kennedy SD, Krugh TR, Turner DH.
    Biochemistry; 2005 Mar 01; 44(8):2845-56. PubMed ID: 15723528
    [Abstract] [Full Text] [Related]

  • 19. The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks.
    Butcher SE, Pyle AM.
    Acc Chem Res; 2011 Dec 20; 44(12):1302-11. PubMed ID: 21899297
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  • 20. Nuclear magnetic resonance spectroscopy and molecular modeling reveal that different hydrogen bonding patterns are possible for G.U pairs: one hydrogen bond for each G.U pair in r(GGCGUGCC)(2) and two for each G.U pair in r(GAGUGCUC)(2).
    Chen X, McDowell JA, Kierzek R, Krugh TR, Turner DH.
    Biochemistry; 2000 Aug 01; 39(30):8970-82. PubMed ID: 10913310
    [Abstract] [Full Text] [Related]

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