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Journal Abstract Search

820 related items for PubMed ID: 17537756

  • 1. RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment.
    Xu X, Ji Y, Stormo GD.
    Bioinformatics; 2007 Aug 01; 23(15):1883-91. PubMed ID: 17537756
    [Abstract] [Full Text] [Related]

  • 2. A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences.
    Ji Y, Xu X, Stormo GD.
    Bioinformatics; 2004 Jul 10; 20(10):1591-602. PubMed ID: 14962926
    [Abstract] [Full Text] [Related]

  • 3. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
    Matsui H, Sato K, Sakakibara Y.
    Proc IEEE Comput Syst Bioinform Conf; 2004 Jul 10; ():290-9. PubMed ID: 16448022
    [Abstract] [Full Text] [Related]

  • 4. Murlet: a practical multiple alignment tool for structural RNA sequences.
    Kiryu H, Tabei Y, Kin T, Asai K.
    Bioinformatics; 2007 Jul 01; 23(13):1588-98. PubMed ID: 17459961
    [Abstract] [Full Text] [Related]

  • 5. Robust prediction of consensus secondary structures using averaged base pairing probability matrices.
    Kiryu H, Kin T, Asai K.
    Bioinformatics; 2007 Feb 15; 23(4):434-41. PubMed ID: 17182698
    [Abstract] [Full Text] [Related]

  • 6. RNA structure alignment by a unit-vector approach.
    Capriotti E, Marti-Renom MA.
    Bioinformatics; 2008 Aug 15; 24(16):i112-8. PubMed ID: 18689811
    [Abstract] [Full Text] [Related]

  • 7. Mining frequent stem patterns from unaligned RNA sequences.
    Hamada M, Tsuda K, Kudo T, Kin T, Asai K.
    Bioinformatics; 2006 Oct 15; 22(20):2480-7. PubMed ID: 16908501
    [Abstract] [Full Text] [Related]

  • 8. Alignment of RNA base pairing probability matrices.
    Hofacker IL, Bernhart SH, Stadler PF.
    Bioinformatics; 2004 Sep 22; 20(14):2222-7. PubMed ID: 15073017
    [Abstract] [Full Text] [Related]

  • 9. Predicting a set of minimal free energy RNA secondary structures common to two sequences.
    Mathews DH.
    Bioinformatics; 2005 May 15; 21(10):2246-53. PubMed ID: 15731207
    [Abstract] [Full Text] [Related]

  • 10. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
    Matsui H, Sato K, Sakakibara Y.
    Bioinformatics; 2005 Jun 01; 21(11):2611-7. PubMed ID: 15784748
    [Abstract] [Full Text] [Related]

  • 11. MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons.
    Siebert S, Backofen R.
    Bioinformatics; 2005 Aug 15; 21(16):3352-9. PubMed ID: 15972285
    [Abstract] [Full Text] [Related]

  • 12. Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction.
    Reeder J, Giegerich R.
    Bioinformatics; 2005 Sep 01; 21(17):3516-23. PubMed ID: 16020472
    [Abstract] [Full Text] [Related]

  • 13. An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots.
    Ruan J, Stormo GD, Zhang W.
    Bioinformatics; 2004 Jan 01; 20(1):58-66. PubMed ID: 14693809
    [Abstract] [Full Text] [Related]

  • 14. SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments.
    Tabei Y, Tsuda K, Kin T, Asai K.
    Bioinformatics; 2006 Jul 15; 22(14):1723-9. PubMed ID: 16690634
    [Abstract] [Full Text] [Related]

  • 15. RNA structural alignments, part II: non-Sankoff approaches for structural alignments.
    Asai K, Hamada M.
    Methods Mol Biol; 2014 Jul 15; 1097():291-301. PubMed ID: 24639165
    [Abstract] [Full Text] [Related]

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  • 17. MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing.
    Lindgreen S, Gardner PP, Krogh A.
    Bioinformatics; 2007 Dec 15; 23(24):3304-11. PubMed ID: 18006551
    [Abstract] [Full Text] [Related]

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  • 20. Multiple structural alignment and clustering of RNA sequences.
    Torarinsson E, Havgaard JH, Gorodkin J.
    Bioinformatics; 2007 Apr 15; 23(8):926-32. PubMed ID: 17324941
    [Abstract] [Full Text] [Related]

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