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Journal Abstract Search

266 related items for PubMed ID: 17550911

  • 1. Finding cis-regulatory modules in Drosophila using phylogenetic hidden Markov models.
    Wong WS, Nielsen R.
    Bioinformatics; 2007 Aug 15; 23(16):2031-7. PubMed ID: 17550911
    [Abstract] [Full Text] [Related]

  • 2. Generalized hierarchical markov models for the discovery of length-constrained sequence features from genome tiling arrays.
    Gupta M.
    Biometrics; 2007 Sep 15; 63(3):797-805. PubMed ID: 17825011
    [Abstract] [Full Text] [Related]

  • 3. A segmentation/clustering model for the analysis of array CGH data.
    Picard F, Robin S, Lebarbier E, Daudin JJ.
    Biometrics; 2007 Sep 15; 63(3):758-66. PubMed ID: 17825008
    [Abstract] [Full Text] [Related]

  • 4. Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov models.
    Husmeier D.
    Bioinformatics; 2005 Sep 01; 21 Suppl 2():ii166-72. PubMed ID: 16204097
    [Abstract] [Full Text] [Related]

  • 5. Decoding non-unique oligonucleotide hybridization experiments of targets related by a phylogenetic tree.
    Schliep A, Rahmann S.
    Bioinformatics; 2006 Jul 15; 22(14):e424-30. PubMed ID: 16873503
    [Abstract] [Full Text] [Related]

  • 6. Integrating copy number polymorphisms into array CGH analysis using a robust HMM.
    Shah SP, Xuan X, DeLeeuw RJ, Khojasteh M, Lam WL, Ng R, Murphy KP.
    Bioinformatics; 2006 Jul 15; 22(14):e431-9. PubMed ID: 16873504
    [Abstract] [Full Text] [Related]

  • 7. Sigma: multiple alignment of weakly-conserved non-coding DNA sequence.
    Siddharthan R.
    BMC Bioinformatics; 2006 Mar 16; 7():143. PubMed ID: 16542424
    [Abstract] [Full Text] [Related]

  • 8. A statistical method for alignment-free comparison of regulatory sequences.
    Kantorovitz MR, Robinson GE, Sinha S.
    Bioinformatics; 2007 Jul 01; 23(13):i249-55. PubMed ID: 17646303
    [Abstract] [Full Text] [Related]

  • 9. MORPH: probabilistic alignment combined with hidden Markov models of cis-regulatory modules.
    Sinha S, He X.
    PLoS Comput Biol; 2007 Nov 01; 3(11):e216. PubMed ID: 17997594
    [Abstract] [Full Text] [Related]

  • 10. Bayesian classifiers for detecting HGT using fixed and variable order markov models of genomic signatures.
    Dalevi D, Dubhashi D, Hermansson M.
    Bioinformatics; 2006 Mar 01; 22(5):517-22. PubMed ID: 16403797
    [Abstract] [Full Text] [Related]

  • 11. PhyloGena--a user-friendly system for automated phylogenetic annotation of unknown sequences.
    Hanekamp K, Bohnebeck U, Beszteri B, Valentin K.
    Bioinformatics; 2007 Apr 01; 23(7):793-801. PubMed ID: 17332025
    [Abstract] [Full Text] [Related]

  • 12. BioHMM: a heterogeneous hidden Markov model for segmenting array CGH data.
    Marioni JC, Thorne NP, Tavaré S.
    Bioinformatics; 2006 May 01; 22(9):1144-6. PubMed ID: 16533818
    [Abstract] [Full Text] [Related]

  • 13. Improved prediction of bacterial transcription start sites.
    Gordon JJ, Towsey MW, Hogan JM, Mathews SA, Timms P.
    Bioinformatics; 2006 Jan 15; 22(2):142-8. PubMed ID: 16287942
    [Abstract] [Full Text] [Related]

  • 14. Modeling promoter grammars with evolving hidden Markov models.
    Won KJ, Sandelin A, Marstrand TT, Krogh A.
    Bioinformatics; 2008 Aug 01; 24(15):1669-75. PubMed ID: 18535083
    [Abstract] [Full Text] [Related]

  • 15. Gene function prediction based on genomic context clustering and discriminative learning: an application to bacteriophages.
    Li J, Halgamuge SK, Kells CI, Tang SL.
    BMC Bioinformatics; 2007 May 22; 8 Suppl 4(Suppl 4):S6. PubMed ID: 17570149
    [Abstract] [Full Text] [Related]

  • 16. GARD: a genetic algorithm for recombination detection.
    Kosakovsky Pond SL, Posada D, Gravenor MB, Woelk CH, Frost SD.
    Bioinformatics; 2006 Dec 15; 22(24):3096-8. PubMed ID: 17110367
    [Abstract] [Full Text] [Related]

  • 17. A cis-regulatory logic simulator.
    Zeigler RD, Gertz J, Cohen BA.
    BMC Bioinformatics; 2007 Jul 27; 8():272. PubMed ID: 17662143
    [Abstract] [Full Text] [Related]

  • 18. Identifying cis-regulatory modules by combining comparative and compositional analysis of DNA.
    Pierstorff N, Bergman CM, Wiehe T.
    Bioinformatics; 2006 Dec 01; 22(23):2858-64. PubMed ID: 17032682
    [Abstract] [Full Text] [Related]

  • 19. Phylogeny based discovery of regulatory elements.
    Gertz J, Fay JC, Cohen BA.
    BMC Bioinformatics; 2006 May 22; 7():266. PubMed ID: 16716228
    [Abstract] [Full Text] [Related]

  • 20. Comparative genomic analysis of allatostatin-encoding (Ast) genes in Drosophila species and prediction of regulatory elements by phylogenetic footprinting.
    Bowser PR, Tobe SS.
    Peptides; 2007 Jan 22; 28(1):83-93. PubMed ID: 17175069
    [Abstract] [Full Text] [Related]

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