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Journal Abstract Search

693 related items for PubMed ID: 17567616

  • 21. SitesBase: a database for structure-based protein-ligand binding site comparisons.
    Gold ND, Jackson RM.
    Nucleic Acids Res; 2006 Jan 01; 34(Database issue):D231-4. PubMed ID: 16381853
    [Abstract] [Full Text] [Related]

  • 22. Structure-based prediction of DNA-binding sites on proteins using the empirical preference of electrostatic potential and the shape of molecular surfaces.
    Tsuchiya Y, Kinoshita K, Nakamura H.
    Proteins; 2004 Jun 01; 55(4):885-94. PubMed ID: 15146487
    [Abstract] [Full Text] [Related]

  • 23. PDB-Metrics: a web tool for exploring the PDB contents.
    Fileto R, Kuser PR, Yamagishi ME, Ribeiro AA, Quinalia TG, Franco EH, Mancini AL, Higa RH, Oliveira SR, Santos EH, Vieira FD, Mazoni I, Cruz SA, Neshich G.
    Genet Mol Res; 2006 Jun 30; 5(2):333-41. PubMed ID: 16819713
    [Abstract] [Full Text] [Related]

  • 24. DOCKGROUND resource for studying protein-protein interfaces.
    Douguet D, Chen HC, Tovchigrechko A, Vakser IA.
    Bioinformatics; 2006 Nov 01; 22(21):2612-8. PubMed ID: 16928732
    [Abstract] [Full Text] [Related]

  • 25. Efficient virtual screening using multiple protein conformations described as negative images of the ligand-binding site.
    Virtanen SI, Pentikäinen OT.
    J Chem Inf Model; 2010 Jun 28; 50(6):1005-11. PubMed ID: 20504004
    [Abstract] [Full Text] [Related]

  • 26. Identification of the ligand binding sites on the molecular surface of proteins.
    Kinoshita K, Nakamura H.
    Protein Sci; 2005 Mar 28; 14(3):711-8. PubMed ID: 15689509
    [Abstract] [Full Text] [Related]

  • 27. GeneInfoMiner--a web server for exploring biomedical literature using batch sequence ID.
    Xuan W, Watson SJ, Meng F.
    Bioinformatics; 2005 Aug 15; 21(16):3452-3. PubMed ID: 15994195
    [Abstract] [Full Text] [Related]

  • 28. ProMode: a database of normal mode analyses on protein molecules with a full-atom model.
    Wako H, Kato M, Endo S.
    Bioinformatics; 2004 Sep 01; 20(13):2035-43. PubMed ID: 15059828
    [Abstract] [Full Text] [Related]

  • 29. Wordom: a program for efficient analysis of molecular dynamics simulations.
    Seeber M, Cecchini M, Rao F, Settanni G, Caflisch A.
    Bioinformatics; 2007 Oct 01; 23(19):2625-7. PubMed ID: 17717034
    [Abstract] [Full Text] [Related]

  • 30. AISMIG--an interactive server-side molecule image generator.
    Bohne-Lang A, Groch WD, Ranzinger R.
    Nucleic Acids Res; 2005 Jul 01; 33(Web Server issue):W705-9. PubMed ID: 15980568
    [Abstract] [Full Text] [Related]

  • 31. Performance of the first protein docking server ClusPro in CAPRI rounds 3-5.
    Comeau SR, Vajda S, Camacho CJ.
    Proteins; 2005 Aug 01; 60(2):239-44. PubMed ID: 15981265
    [Abstract] [Full Text] [Related]

  • 32. Exploring the charge space of protein-protein association: a proteomic study.
    Shaul Y, Schreiber G.
    Proteins; 2005 Aug 15; 60(3):341-52. PubMed ID: 15887221
    [Abstract] [Full Text] [Related]

  • 33. IntAct: an open source molecular interaction database.
    Hermjakob H, Montecchi-Palazzi L, Lewington C, Mudali S, Kerrien S, Orchard S, Vingron M, Roechert B, Roepstorff P, Valencia A, Margalit H, Armstrong J, Bairoch A, Cesareni G, Sherman D, Apweiler R.
    Nucleic Acids Res; 2004 Jan 01; 32(Database issue):D452-5. PubMed ID: 14681455
    [Abstract] [Full Text] [Related]

  • 34. PDB-Ligand: a ligand database based on PDB for the automated and customized classification of ligand-binding structures.
    Shin JM, Cho DH.
    Nucleic Acids Res; 2005 Jan 01; 33(Database issue):D238-41. PubMed ID: 15608186
    [Abstract] [Full Text] [Related]

  • 35. Biskit--a software platform for structural bioinformatics.
    Grünberg R, Nilges M, Leckner J.
    Bioinformatics; 2007 Mar 15; 23(6):769-70. PubMed ID: 17237072
    [Abstract] [Full Text] [Related]

  • 36. Sequence-based prediction of protein interaction sites with an integrative method.
    Chen XW, Jeong JC.
    Bioinformatics; 2009 Mar 01; 25(5):585-91. PubMed ID: 19153136
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  • 37. Biological units and their effect upon the properties and prediction of protein-protein interactions.
    Jefferson ER, Walsh TP, Barton GJ.
    J Mol Biol; 2006 Dec 15; 364(5):1118-29. PubMed ID: 17049359
    [Abstract] [Full Text] [Related]

  • 38. MSDsite: a database search and retrieval system for the analysis and viewing of bound ligands and active sites.
    Golovin A, Dimitropoulos D, Oldfield T, Rachedi A, Henrick K.
    Proteins; 2005 Jan 01; 58(1):190-9. PubMed ID: 15468317
    [Abstract] [Full Text] [Related]

  • 39. Detection of functionally important regions in "hypothetical proteins" of known structure.
    Nimrod G, Schushan M, Steinberg DM, Ben-Tal N.
    Structure; 2008 Dec 10; 16(12):1755-63. PubMed ID: 19081051
    [Abstract] [Full Text] [Related]

  • 40. High throughput processing of the structural information in the protein data bank.
    Szabadka Z, Grolmusz V.
    J Mol Graph Model; 2007 Mar 10; 25(6):831-6. PubMed ID: 16971149
    [Abstract] [Full Text] [Related]

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