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891 related items for PubMed ID: 17581081

  • 1. Biopolymer structure simulation and optimization via fragment regrowth Monte Carlo.
    Zhang J, Kou SC, Liu JS.
    J Chem Phys; 2007 Jun 14; 126(22):225101. PubMed ID: 17581081
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  • 2. Efficient global biopolymer sampling with end-transfer configurational bias Monte Carlo.
    Arya G, Schlick T.
    J Chem Phys; 2007 Jan 28; 126(4):044107. PubMed ID: 17286462
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  • 3. Monte Carlo simulation of protein folding in the presence of residue-specific binding sites.
    Rossinsky E, Srebnik S.
    Biopolymers; 2005 Dec 05; 79(5):259-68. PubMed ID: 16134169
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  • 5. Monte Carlo method for computing density of states and quench probability of potential energy and enthalpy landscapes.
    Mauro JC, Loucks RJ, Balakrishnan J, Raghavan S.
    J Chem Phys; 2007 May 21; 126(19):194103. PubMed ID: 17523794
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  • 7. Monte Carlo simulation and molecular theory of tethered polyelectrolytes.
    Hehmeyer OJ, Arya G, Panagiotopoulos AZ, Szleifer I.
    J Chem Phys; 2007 Jun 28; 126(24):244902. PubMed ID: 17614585
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  • 10. Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme.
    Kolinski A, Skolnick J.
    Proteins; 1994 Apr 28; 18(4):338-52. PubMed ID: 8208726
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  • 11. Application of the multiensemble sampling to the equilibrium folding of proteins.
    Son HS, Kim SY, Lee J, Han KK.
    Bioinformatics; 2006 Aug 01; 22(15):1832-7. PubMed ID: 16766555
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  • 13. Annealing contour Monte Carlo algorithm for structure optimization in an off-lattice protein model.
    Liang F.
    J Chem Phys; 2004 Apr 08; 120(14):6756-63. PubMed ID: 15267570
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  • 18. Protein structure prediction with the UNRES force-field using Replica-Exchange Monte Carlo-with-Minimization; Comparison with MCM, CSA, and CFMC.
    Nanias M, Chinchio M, Ołdziej S, Czaplewski C, Scheraga HA.
    J Comput Chem; 2005 Nov 15; 26(14):1472-86. PubMed ID: 16088925
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  • 19. Optimizing physical energy functions for protein folding.
    Fujitsuka Y, Takada S, Luthey-Schulten ZA, Wolynes PG.
    Proteins; 2004 Jan 01; 54(1):88-103. PubMed ID: 14705026
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  • 20. Efficient computation of transient solutions of the chemical master equation based on uniformization and quasi-Monte Carlo.
    Hellander A.
    J Chem Phys; 2008 Apr 21; 128(15):154109. PubMed ID: 18433192
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