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Journal Abstract Search

106 related items for PubMed ID: 17691897

  • 1. Simulating protein motions with rigidity analysis.
    Thomas S, Tang X, Tapia L, Amato NM.
    J Comput Biol; 2007; 14(6):839-55. PubMed ID: 17691897
    [Abstract] [Full Text] [Related]

  • 2. Kinetics analysis methods for approximate folding landscapes.
    Tapia L, Tang X, Thomas S, Amato NM.
    Bioinformatics; 2007 Jul 01; 23(13):i539-48. PubMed ID: 17646341
    [Abstract] [Full Text] [Related]

  • 3. Folding funnels and conformational transitions via hinge-bending motions.
    Kumar S, Ma B, Tsai CJ, Wolfson H, Nussinov R.
    Cell Biochem Biophys; 1999 Jul 01; 31(2):141-64. PubMed ID: 10593256
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  • 4. Using motion planning to study protein folding pathways.
    Amato NM, Song G.
    J Comput Biol; 2002 Jul 01; 9(2):149-68. PubMed ID: 12015875
    [Abstract] [Full Text] [Related]

  • 5. Subtle pH differences trigger single residue motions for moderating conformations of calmodulin.
    Atilgan AR, Aykut AO, Atilgan C.
    J Chem Phys; 2011 Oct 21; 135(15):155102. PubMed ID: 22029336
    [Abstract] [Full Text] [Related]

  • 6. Sampling small-scale and large-scale conformational changes in proteins and molecular complexes.
    Yun MR, Mousseau N, Derreumaux P.
    J Chem Phys; 2007 Mar 14; 126(10):105101. PubMed ID: 17362087
    [Abstract] [Full Text] [Related]

  • 7. Protein folding by motion planning.
    Thomas S, Song G, Amato NM.
    Phys Biol; 2005 Nov 09; 2(4):S148-55. PubMed ID: 16280620
    [Abstract] [Full Text] [Related]

  • 8. Protein conformational transitions coupled to binding in molecular recognition of unstructured proteins: deciphering the effect of intermolecular interactions on computational structure prediction of the p27Kip1 protein bound to the cyclin A-cyclin-dependent kinase 2 complex.
    Verkhivker GM.
    Proteins; 2005 Feb 15; 58(3):706-16. PubMed ID: 15609350
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  • 14. Protein promiscuity: drug resistance and native functions--HIV-1 case.
    Fernández A, Tawfik DS, Berkhout B, Sanders R, Kloczkowski A, Sen T, Jernigan B.
    J Biomol Struct Dyn; 2005 Jun 15; 22(6):615-24. PubMed ID: 15842167
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  • 15. Ligand-induced conformational changes in tissue transglutaminase: Monte Carlo analysis of small-angle scattering data.
    Mariani P, Carsughi F, Spinozzi F, Romanzetti S, Meier G, Casadio R, Bergamini CM.
    Biophys J; 2000 Jun 15; 78(6):3240-51. PubMed ID: 10828000
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  • 17. Influence of multiple well defined conformations on small-angle scattering of proteins in solution.
    Heller WT.
    Acta Crystallogr D Biol Crystallogr; 2005 Jan 15; 61(Pt 1):33-44. PubMed ID: 15608373
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  • 18. Energy landscape views for interplays among folding, binding, and allostery of calmodulin domains.
    Li W, Wang W, Takada S.
    Proc Natl Acad Sci U S A; 2014 Jul 22; 111(29):10550-5. PubMed ID: 25002491
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  • 19. A path planning-based study of protein folding with a case study of hairpin formation in protein G and L.
    Song G, Thomas S, Dill KA, Scholtz JM, Amato NM.
    Pac Symp Biocomput; 2003 Jul 22; ():240-51. PubMed ID: 12603032
    [Abstract] [Full Text] [Related]

  • 20. Large loop conformation sampling using the activation relaxation technique, ART-nouveau method.
    St-Pierre JF, Mousseau N.
    Proteins; 2012 Jul 22; 80(7):1883-94. PubMed ID: 22488731
    [Abstract] [Full Text] [Related]

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